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(-) Description

Title :  AN NMR, CD, MOLECULAR DYNAMICS, AND FLUOROMETRIC STUDY OF THE CONFORMATION OF THE BRADYKININ ANTAGONIST B-9340 IN WATER AND IN AQUEOUS MICELLAR SOLUTIONS
 
Authors :  J. Sejbal, G. Kotovych, J. R. Cann, J. M. Stewart, L. Gera
Date :  28 Jul 95  (Deposition) - 07 Dec 95  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
NMR Structure *:  A  (1x)
Keywords :  Bradykinin Antagonist, Antagonist (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Sejbal, J. R. Cann, J. M. Stewart, L. Gera, G. Kotovych
An Nmr, Cd, Molecular Dynamics, And Fluorometric Study Of The Conformation Of The Bradykinin Antagonist B-9340 In Water And In Aqueous Micellar Solutions.
J. Med. Chem. V. 39 1281 1996
PubMed-ID: 8632435  |  Reference-DOI: 10.1021/JM950485F
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - BRADYKININ ANTAGONIST B-9340
    Chains: A
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure : A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 5)

NMR Structure (5, 5)
No.NameCountTypeFull Name
1DAR1Mod. Amino AcidD-ARGININE
2HYP1Mod. Amino Acid4-HYDROXYPROLINE
3IGL1Mod. Amino AcidALPHA-AMINO-2-INDANACETIC ACID
4OIC1Mod. Amino AcidOCTAHYDROINDOLE-2-CARBOXYLIC ACID
5TIH1Mod. Amino AcidBETA(2-THIENYL)ALANINE
NMR Structure * (5, 5)
No.NameCountTypeFull Name
1DAR1Mod. Amino AcidD-ARGININE
2HYP1Mod. Amino Acid4-HYDROXYPROLINE
3IGL1Mod. Amino AcidALPHA-AMINO-2-INDANACETIC ACID
4OIC1Mod. Amino AcidOCTAHYDROINDOLE-2-CARBOXYLIC ACID
5TIH1Mod. Amino AcidBETA(2-THIENYL)ALANINE

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:2 , PRO A:3BINDING SITE FOR RESIDUE DAR A 1
2AC2SOFTWARETIH A:6 , SER A:7 , IGL A:8BINDING SITE FOR RESIDUE OIC A 9

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1BDK)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:10
                                         
               SCOP domains d1bdka_ A: SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                  1bdk A  1 xRPpGaSgxR 10
                            |  | | |10
                            |  | | || 
                            1-DAR| || 
                               4-HYP| 
                                 6-TIH
                                   8-IGL
                                    9-OIC
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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