1AVO - JenaLib

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:60
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:60
                                    13        23        33        43        53        63
          PSME1_HUMAN     4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
               SCOP domains d1avo.1 A:,B: Proteasome activator reg(alpha)                SCOP domains
               CATH domains 1avoA00 A:4-63  [code=1.20.5.120, no name defined]           CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------N-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a Exon 1.2b  Exon 1.3  PDB: A:25-4Exon 1.4a          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------ Transcript 1 (2)
                 1avo A   4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
                                    13        23        33        43        53        63

Chain B from PDB  Type:PROTEIN  Length:140
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:140
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242
          PSME1_HUMAN   103 PVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
               SCOP domains d1avo.1 A:,B: Proteasome activator reg(alpha)                                                                                                SCOP domains
               CATH domains 1avoB00 B:103-242  [code=1.20.120.180, no name defined]                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ----------------------------Exon 1.7  PDB: B:131-15Exon 1.8  PDB: B:154-17------------------Exon 1.10a  PDB: B:195-223   Exon 1.10d          Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: B:103-130   ---------------------------------------------Exon 1.9           ------------------------------------------------ Transcript 1 (2)
                 1avo B 103 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain C from PDB  Type:PROTEIN  Length:60
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:60
                                    13        23        33        43        53        63
          PSME1_HUMAN     4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
               SCOP domains d1avo.2 C:,D: Proteasome activator reg(alpha)                SCOP domains
               CATH domains 1avoC00 C:4-63  [code=1.20.5.120, no name defined]           CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------N-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a Exon 1.2b  Exon 1.3  PDB: C:25-4Exon 1.4a          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------ Transcript 1 (2)
                 1avo C   4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
                                    13        23        33        43        53        63

Chain D from PDB  Type:PROTEIN  Length:140
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:140
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242
          PSME1_HUMAN   103 PVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
               SCOP domains d1avo.2 C:,D: Proteasome activator reg(alpha)                                                                                                SCOP domains
               CATH domains 1avoD00 D:103-242  [code=1.20.120.180, no name defined]                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ----------------------------Exon 1.7  PDB: D:131-15Exon 1.8  PDB: D:154-17------------------Exon 1.10a  PDB: D:195-223   Exon 1.10d          Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: D:103-130   ---------------------------------------------Exon 1.9           ------------------------------------------------ Transcript 1 (2)
                 1avo D 103 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain E from PDB  Type:PROTEIN  Length:60
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:60
                                    13        23        33        43        53        63
          PSME1_HUMAN     4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
               SCOP domains d1avo.3 E:,F: Proteasome activator reg(alpha)                SCOP domains
               CATH domains 1avoE00 E:4-63  [code=1.20.5.120, no name defined]           CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------N-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a Exon 1.2b  Exon 1.3  PDB: E:25-4Exon 1.4a          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------ Transcript 1 (2)
                 1avo E   4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
                                    13        23        33        43        53        63

Chain F from PDB  Type:PROTEIN  Length:140
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:140
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242
          PSME1_HUMAN   103 PVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
               SCOP domains d1avo.3 E:,F: Proteasome activator reg(alpha)                                                                                                SCOP domains
               CATH domains 1avoF00 F:103-242  [code=1.20.120.180, no name defined]                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ----------------------------Exon 1.7  PDB: F:131-15Exon 1.8  PDB: F:154-17------------------Exon 1.10a  PDB: F:195-223   Exon 1.10d          Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: F:103-130   ---------------------------------------------Exon 1.9           ------------------------------------------------ Transcript 1 (2)
                 1avo F 103 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain G from PDB  Type:PROTEIN  Length:60
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:60
                                    13        23        33        43        53        63
          PSME1_HUMAN     4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
               SCOP domains d1avo.4 G:,H: Proteasome activator reg(alpha)                SCOP domains
               CATH domains 1avoG00 G:4-63  [code=1.20.5.120, no name defined]           CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------N-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a Exon 1.2b  Exon 1.3  PDB: G:25-4Exon 1.4a          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------ Transcript 1 (2)
                 1avo G   4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
                                    13        23        33        43        53        63

Chain H from PDB  Type:PROTEIN  Length:140
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:140
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242
          PSME1_HUMAN   103 PVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
               SCOP domains d1avo.4 G:,H: Proteasome activator reg(alpha)                                                                                                SCOP domains
               CATH domains 1avoH00 H:103-242  [code=1.20.120.180, no name defined]                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ----------------------------Exon 1.7  PDB: H:131-15Exon 1.8  PDB: H:154-17------------------Exon 1.10a  PDB: H:195-223   Exon 1.10d          Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: H:103-130   ---------------------------------------------Exon 1.9           ------------------------------------------------ Transcript 1 (2)
                 1avo H 103 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain I from PDB  Type:PROTEIN  Length:60
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:60
                                    13        23        33        43        53        63
          PSME1_HUMAN     4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
               SCOP domains d1avo.5 I:,J: Proteasome activator reg(alpha)                SCOP domains
               CATH domains 1avoI00 I:4-63  [code=1.20.5.120, no name defined]           CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------N-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a Exon 1.2b  Exon 1.3  PDB: I:25-4Exon 1.4a          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------ Transcript 1 (2)
                 1avo I   4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
                                    13        23        33        43        53        63

Chain J from PDB  Type:PROTEIN  Length:140
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:140
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242
          PSME1_HUMAN   103 PVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
               SCOP domains d1avo.5 I:,J: Proteasome activator reg(alpha)                                                                                                SCOP domains
               CATH domains 1avoJ00 J:103-242  [code=1.20.120.180, no name defined]                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ----------------------------Exon 1.7  PDB: J:131-15Exon 1.8  PDB: J:154-17------------------Exon 1.10a  PDB: J:195-223   Exon 1.10d          Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: J:103-130   ---------------------------------------------Exon 1.9           ------------------------------------------------ Transcript 1 (2)
                 1avo J 103 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain K from PDB  Type:PROTEIN  Length:60
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:60
                                    13        23        33        43        53        63
          PSME1_HUMAN     4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
               SCOP domains d1avo.6 K:,L: Proteasome activator reg(alpha)                SCOP domains
               CATH domains 1avoK00 K:4-63  [code=1.20.5.120, no name defined]           CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------N-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a Exon 1.2b  Exon 1.3  PDB: K:25-4Exon 1.4a          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------ Transcript 1 (2)
                 1avo K   4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
                                    13        23        33        43        53        63

Chain L from PDB  Type:PROTEIN  Length:140
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:140
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242
          PSME1_HUMAN   103 PVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
               SCOP domains d1avo.6 K:,L: Proteasome activator reg(alpha)                                                                                                SCOP domains
               CATH domains 1avoL00 L:103-242  [code=1.20.120.180, no name defined]                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ----------------------------Exon 1.7  PDB: L:131-15Exon 1.8  PDB: L:154-17------------------Exon 1.10a  PDB: L:195-223   Exon 1.10d          Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: L:103-130   ---------------------------------------------Exon 1.9           ------------------------------------------------ Transcript 1 (2)
                 1avo L 103 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain M from PDB  Type:PROTEIN  Length:60
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:60
                                    13        23        33        43        53        63
          PSME1_HUMAN     4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
               SCOP domains d1avo.7 M:,N: Proteasome activator reg(alpha)                SCOP domains
               CATH domains 1avoM00 M:4-63  [code=1.20.5.120, no name defined]           CATH domains
               Pfam domains ------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh..hhh.............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------N-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.1a Exon 1.2b  Exon 1.3  PDB: M:25-4Exon 1.4a          Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------------------------ Transcript 1 (2)
                 1avo M   4 LRVQPEAQAKVDVFREDLCTKTENLLGSYFPKKISELDAFLKEPALNEANLSNLKAPLDI  63
                                    13        23        33        43        53        63

Chain N from PDB  Type:PROTEIN  Length:140
 aligned with PSME1_HUMAN | Q06323 from UniProtKB/Swiss-Prot  Length:249

    Alignment length:140
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242
          PSME1_HUMAN   103 PVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
               SCOP domains d1avo.7 M:,N: Proteasome activator reg(alpha)                                                                                                SCOP domains
               CATH domains 1avoN00 N:103-242  [code=1.20.120.180, no name defined]                                                                                      CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) ----------------------------Exon 1.7  PDB: N:131-15Exon 1.8  PDB: N:154-17------------------Exon 1.10a  PDB: N:195-223   Exon 1.10d          Transcript 1 (1)
           Transcript 1 (2) Exon 1.6b  PDB: N:103-130   ---------------------------------------------Exon 1.9           ------------------------------------------------ Transcript 1 (2)
                 1avo N 103 AVNCNEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAKQPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYAVLYDIILKNFEKLKKPRG 242
                                   112       122       132       142       152       162       172       182       192       202       212       222       232       242

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N (PSME1_HUMAN | Q06323)

molecular function
	GO:0061133	endopeptidase activator activity	Increases the activity of an endopeptidase, any enzyme that hydrolyzes nonterminal peptide bonds in polypeptides.
biological process
	GO:0038095	Fc-epsilon receptor signaling pathway	A series of molecular signals initiated by the binding of the Fc portion of immunoglobulin E (IgE) to an Fc-epsilon receptor on the surface of a signal-receiving cell, and ending with regulation of a downstream cellular process, e.g. transcription. The Fc portion of an immunoglobulin is its C-terminal constant region.
	GO:0000165	MAPK cascade	An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP Kinase-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell.
	GO:0038061	NIK/NF-kappaB signaling	The process in which a signal is passed on to downstream components within the cell through the NIK-dependent processing and activation of NF-KappaB. Begins with activation of the NF-KappaB-inducing kinase (NIK), which in turn phosphorylates and activates IkappaB kinase alpha (IKKalpha). IKKalpha phosphorylates the NF-Kappa B2 protein (p100) leading to p100 processing and release of an active NF-KappaB (p52).
	GO:0050852	T cell receptor signaling pathway	A series of molecular signals initiated by the cross-linking of an antigen receptor on a T cell.
	GO:0060071	Wnt signaling pathway, planar cell polarity pathway	The series of molecular signals initiated by binding of a Wnt protein to a receptor on the surface of the target cell where activated receptors signal via downstream effectors including C-Jun N-terminal kinase (JNK) to modulate cytoskeletal elements and control cell polarity.
	GO:0031145	anaphase-promoting complex-dependent catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by the anaphase-promoting complex, and mediated by the proteasome.
	GO:0019884	antigen processing and presentation of exogenous antigen	The process in which an antigen-presenting cell expresses antigen (peptide or lipid) of exogenous origin on its cell surface in association with an MHC protein complex.
	GO:0002479	antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent	The process in which an antigen-presenting cell expresses a peptide antigen of exogenous origin on its cell surface in association with an MHC class I protein complex following intracellular transport via a TAP (transporter associated with antigen processing) pathway. The peptide is typically a fragment of a larger exogenous protein which has been degraded within the cell and is dependent on TAP transport from the cytosol to ER for association with the MHC class I molecule. Class I here refers to classical class I molecules.
	GO:0090090	negative regulation of canonical Wnt signaling pathway	Any process that decreases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
	GO:0051436	negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle	Any process that stops, prevents, or reduces the frequency, rate or extent of ubiquitin ligase activity that contributes to the mitotic cell cycle.
	GO:0090263	positive regulation of canonical Wnt signaling pathway	Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
	GO:0010950	positive regulation of endopeptidase activity	Any process that increases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins.
	GO:0051437	positive regulation of ubiquitin-protein ligase activity involved in regulation of mitotic cell cycle transition	Any process that activates, maintains or increases the rate of ubiquitin ligase activity that contributes to the regulation of the mitotic cell cycle phase transition.
	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
	GO:0000209	protein polyubiquitination	Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain.
	GO:2000045	regulation of G1/S transition of mitotic cell cycle	Any cell cycle regulatory process that controls the commitment of a cell from G1 to S phase of the mitotic cell cycle.
	GO:0006521	regulation of cellular amino acid metabolic process	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids.
	GO:0043488	regulation of mRNA stability	Any process that modulates the propensity of mRNA molecules to degradation. Includes processes that both stabilize and destabilize mRNAs.
	GO:0061136	regulation of proteasomal protein catabolic process	Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
	GO:0002223	stimulatory C-type lectin receptor signaling pathway	Any series of molecular signals generated as a consequence of binding to a C-type lectin receptor capable of cellular activation.
	GO:0033209	tumor necrosis factor-mediated signaling pathway	A series of molecular signals initiated by the binding of a tumor necrosis factor to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0008537	proteasome activator complex	A multisubunit complex that activates the hydrolysis of small nonubiquitinated peptides by binding to the proteasome core complex.
	GO:0000502	proteasome complex	A large multisubunit complex which catalyzes protein degradation, found in eukaryotes, archaea and some bacteria. In eukaryotes, this complex consists of the barrel shaped proteasome core complex and one or two associated proteins or complexes that act in regulating entry into or exit from the core.

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 7)

PROSITE Motifs (0, 0)

Exons (10, 70)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 7)

CATH Domains (2, 14)

Pfam Domains (0, 0)

Gene Ontology (28, 28)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File