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(-) Description

Authors :  L. Chen, Y. Wang, D. Wells, D. Toh, H. Harold, J. Zhou, E. Digiammarino, E. J. Meehan
Date :  06 May 05  (Deposition) - 16 May 06  (Release) - 24 Feb 09  (Revision)
Resolution :  1.07
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta Barrel, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
Reference :  L. Chen, Y. Wang, D. Wells, D. Toh, H. Harold, J. Zhou, E. Digiammarino, E. J. Meehan
Structure Of The Sh3 Domain Of Human Osteoclast-Stimulating Factor At Atomic Resolution.
Acta Crystallogr. , Sect. F V. 62 844 2006
PubMed-ID: 16946461  |  Reference-DOI: 10.1107/S1744309106030004
(for further references see the PDB file header)

(-) Compounds

    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET28-OSF-SH3
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentSH3 DOMAIN
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1ZLM)

(-) Sites  (0, 0)

(no "Site" information available for 1ZLM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1ZLM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1ZLM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 1)

Asymmetric/Biological Unit (1, 1)
1SH3PS50002 Src homology 3 (SH3) domain profile.OSTF1_HUMAN12-71  1A:12-69

(-) Exons   (5, 5)

Asymmetric/Biological Unit (5, 5)
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:58
 aligned with OSTF1_HUMAN | Q92882 from UniProtKB/Swiss-Prot  Length:214

    Alignment length:58
                                    21        31        41        51        61        
               SCOP domains d1zlma_ A: automated matches                               SCOP domains
               CATH domains 1zlmA00 A:12-69 SH3 Domains                                CATH domains
           Pfam domains (1) ---------------------------------------Ank_2-1zlmA01       Pfam domains (1)
           Pfam domains (2) ------SH3_1-1zlmA02 A:18-63                         ------ Pfam domains (2)
         Sec.struct. author ...eeeee..................eeeeee.....eeeeee..eeeeee...eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------S--------------------- SAPs(SNPs)
                    PROSITE SH3  PDB: A:12-69 UniProt: 12-71                           PROSITE
           Transcript 1 (1) 1---------------Exon 1.3         Exon 1.4  PDB: A:45-66--- Transcript 1 (1)
           Transcript 1 (2) Exon 1.2        --------------------------------------1.5  Transcript 1 (2)
                                    21        31        41        51        61        

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
Class: Mainly Beta (13760)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
Clan: Ank (35)
Clan: SH3 (175)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (OSTF1_HUMAN | Q92882)
molecular function
    GO:0017124    SH3 domain binding    Interacting selectively and non-covalently with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0001503    ossification    The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.


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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

        OSTF1_HUMAN | Q928821x2k 3ehq 3ehr

(-) Related Entries Specified in the PDB File

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