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(-) Description

Title :  STRUCTURE OF THE READY OXIDIZED FORM OF [NIFE]-HYDROGENASE
 
Authors :  A. Volbeda, L. Martin, C. Cavazza, M. Matho, B. W. Faber, W. Roseboom, S. P. Albracht, E. Garcin, M. Rousset, J. C. Fontecilla-Camps
Date :  04 Feb 05  (Deposition) - 19 Apr 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,B,C,D,F,G,H,I,J,K,M,N  (2x)
Biol. Unit 1:  A,H  (1x)
Biol. Unit 2:  B,I  (1x)
Biol. Unit 3:  C,J  (1x)
Biol. Unit 4:  D,K  (1x)
Biol. Unit 5:  F,M  (1x)
Biol. Unit 6:  G,N  (1x)
Keywords :  Nib State, Hydroxide Bridge, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  A. Volbeda, L. Martin, C. Cavazza, M. Matho, B. W. Faber, W. Roseboom, S. P. Albracht, E. Garcin, M. Rousset, J. C. Fontecilla-Camps
Structural Differences Between The Ready And Unready Oxidized States Of [Nife] Hydrogenases.
J. Biol. Inorg. Chem. V. 10 239 2005
PubMed-ID: 15803334  |  Reference-DOI: 10.1007/S00775-005-0632-X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PERIPLASMIC [NIFE] HYDROGENASE SMALL SUBUNIT
    Cellular LocationPERIPLASM
    ChainsA, B, C, D, F, G
    EC Number1.12.2.1
    Organism ScientificDESULFOVIBRIO FRUCTOSOVORANS
    Organism Taxid878
    StrainWILD TYPE
    SynonymNIFE HYDROGENLYASE SMALL CHAIN
 
Molecule 2 - PERIPLASMIC [NIFE] HYDROGENASE LARGE SUBUNIT
    Cellular LocationPERIPLASM
    ChainsH, I, J, K, M, N
    EC Number1.12.2.1
    Organism ScientificDESULFOVIBRIO FRUCTOSOVORANS
    Organism Taxid878
    StrainWILD TYPE
    SynonymNIFE HYDROGENLYASE LARGE CHAIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit (2x)ABCDFGHIJKMN
Biological Unit 1 (1x)A     H     
Biological Unit 2 (1x) B     I    
Biological Unit 3 (1x)  C     J   
Biological Unit 4 (1x)   D     K  
Biological Unit 5 (1x)    F     M 
Biological Unit 6 (1x)     G     N

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 36)

Asymmetric Unit (5, 36)
No.NameCountTypeFull Name
1F3S6Ligand/IonFE3-S4 CLUSTER
2FCO6Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
3MG6Ligand/IonMAGNESIUM ION
4NI6Ligand/IonNICKEL (II) ION
5SF412Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
3MG-1Ligand/IonMAGNESIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 2 (3, 4)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
3MG-1Ligand/IonMAGNESIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 3 (3, 4)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
3MG-1Ligand/IonMAGNESIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 4 (3, 4)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
3MG-1Ligand/IonMAGNESIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 5 (3, 4)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
3MG-1Ligand/IonMAGNESIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5SF42Ligand/IonIRON/SULFUR CLUSTER
Biological Unit 6 (3, 4)
No.NameCountTypeFull Name
1F3S1Ligand/IonFE3-S4 CLUSTER
2FCO1Ligand/IonCARBONMONOXIDE-(DICYANO) IRON
3MG-1Ligand/IonMAGNESIUM ION
4NI-1Ligand/IonNICKEL (II) ION
5SF42Ligand/IonIRON/SULFUR CLUSTER

(-) Sites  (36, 36)

Asymmetric Unit (36, 36)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS H:72 , CYS H:75 , CYS H:543 , CYS H:546 , FCO H:550 , HOH H:557BINDING SITE FOR RESIDUE NI H 551
02AC2SOFTWARECYS I:72 , CYS I:75 , CYS I:543 , CYS I:546 , FCO I:550 , HOH I:557BINDING SITE FOR RESIDUE NI I 551
03AC3SOFTWARECYS J:72 , CYS J:75 , CYS J:543 , CYS J:546 , FCO J:550 , HOH J:557BINDING SITE FOR RESIDUE NI J 551
04AC4SOFTWARECYS K:72 , CYS K:75 , CYS K:543 , CYS K:546 , FCO K:550 , HOH K:557BINDING SITE FOR RESIDUE NI K 551
05AC5SOFTWARECYS M:72 , CYS M:75 , CYS M:543 , CYS M:546 , FCO M:550 , HOH M:557BINDING SITE FOR RESIDUE NI M 551
06AC6SOFTWARECYS N:72 , CYS N:75 , CYS N:543 , CYS N:546 , FCO N:550 , HOH N:557BINDING SITE FOR RESIDUE NI N 551
07AC7SOFTWAREGLU H:53 , LEU H:495 , HIS H:549 , HOH H:554 , HOH H:555 , HOH H:556BINDING SITE FOR RESIDUE MG H 553
08AC8SOFTWAREGLU I:53 , LEU I:495 , HIS I:549 , HOH I:554 , HOH I:555 , HOH I:556BINDING SITE FOR RESIDUE MG I 553
09AC9SOFTWAREGLU J:53 , LEU J:495 , HIS J:549 , HOH J:554 , HOH J:555 , HOH J:556BINDING SITE FOR RESIDUE MG J 553
10BC1SOFTWAREGLU K:53 , LEU K:495 , HIS K:549 , HOH K:554 , HOH K:555 , HOH K:556BINDING SITE FOR RESIDUE MG K 553
11BC2SOFTWAREGLU M:53 , LEU M:495 , HIS M:549 , HOH M:554 , HOH M:555 , HOH M:556BINDING SITE FOR RESIDUE MG M 553
12BC3SOFTWAREGLU N:53 , LEU N:495 , HIS N:549 , HOH N:554 , HOH N:555 , HOH N:556BINDING SITE FOR RESIDUE MG N 553
13BC4SOFTWAREHIS A:184 , CYS A:187 , ARG A:189 , LEU A:190 , CYS A:212 , LEU A:213 , CYS A:218BINDING SITE FOR RESIDUE SF4 A 265
14BC5SOFTWAREASN A:225 , CYS A:227 , PHE A:232 , CYS A:245 , LEU A:246 , GLY A:247 , CYS A:248 , LYS H:225 , GLN H:230BINDING SITE FOR RESIDUE F3S A 266
15BC6SOFTWARECYS A:17 , CYS A:20 , THR A:113 , CYS A:114 , GLY A:146 , CYS A:147 , PRO A:148 , ARG H:70BINDING SITE FOR RESIDUE SF4 A 267
16BC7SOFTWARECYS H:75 , VAL H:78 , HIS H:79 , ALA H:474 , PRO H:475 , ARG H:476 , LEU H:479 , VAL H:497 , PRO H:498 , SER H:499 , CYS H:546 , NI H:551 , HOH H:557BINDING SITE FOR RESIDUE FCO H 550
17BC8SOFTWAREHIS B:184 , CYS B:187 , ARG B:189 , LEU B:190 , CYS B:212 , LEU B:213 , CYS B:218BINDING SITE FOR RESIDUE SF4 B 265
18BC9SOFTWAREASN B:225 , CYS B:227 , PHE B:232 , TRP B:237 , CYS B:245 , LEU B:246 , CYS B:248 , LYS I:225 , GLN I:230BINDING SITE FOR RESIDUE F3S B 266
19CC1SOFTWAREGLU B:16 , CYS B:17 , CYS B:20 , GLY B:112 , THR B:113 , CYS B:114 , GLY B:146 , CYS B:147 , PRO B:148 , ARG I:70BINDING SITE FOR RESIDUE SF4 B 267
20CC2SOFTWARECYS I:75 , VAL I:78 , HIS I:79 , ALA I:474 , PRO I:475 , ARG I:476 , LEU I:479 , VAL I:497 , PRO I:498 , SER I:499 , CYS I:546 , NI I:551 , HOH I:557BINDING SITE FOR RESIDUE FCO I 550
21CC3SOFTWAREHIS C:184 , CYS C:187 , ARG C:189 , LEU C:190 , CYS C:212 , LEU C:213 , CYS C:218BINDING SITE FOR RESIDUE SF4 C 265
22CC4SOFTWARETHR C:223 , ASN C:225 , CYS C:227 , PHE C:232 , TRP C:237 , CYS C:245 , LEU C:246 , CYS C:248 , GLN J:230BINDING SITE FOR RESIDUE F3S C 266
23CC5SOFTWAREGLU C:16 , CYS C:17 , CYS C:20 , GLY C:112 , THR C:113 , CYS C:114 , GLY C:146 , CYS C:147 , PRO C:148 , ARG J:70 , HIS J:228BINDING SITE FOR RESIDUE SF4 C 267
24CC6SOFTWARECYS J:75 , VAL J:78 , HIS J:79 , ALA J:474 , PRO J:475 , ARG J:476 , LEU J:479 , VAL J:497 , PRO J:498 , SER J:499 , CYS J:546 , NI J:551 , HOH J:557BINDING SITE FOR RESIDUE FCO J 550
25CC7SOFTWAREHIS D:184 , CYS D:187 , ARG D:189 , LEU D:190 , CYS D:212 , LEU D:213 , CYS D:218 , PRO D:221BINDING SITE FOR RESIDUE SF4 D 265
26CC8SOFTWARETHR D:223 , ASN D:225 , CYS D:227 , PHE D:232 , CYS D:245 , LEU D:246 , CYS D:248 , LYS K:225 , GLN K:230BINDING SITE FOR RESIDUE F3S D 266
27CC9SOFTWAREGLU D:16 , CYS D:17 , CYS D:20 , THR D:113 , CYS D:114 , GLY D:146 , CYS D:147 , ARG K:70 , HIS K:228BINDING SITE FOR RESIDUE SF4 D 267
28DC1SOFTWARECYS K:75 , HIS K:79 , ALA K:474 , PRO K:475 , ARG K:476 , LEU K:479 , VAL K:497 , PRO K:498 , SER K:499 , CYS K:546 , NI K:551 , HOH K:557BINDING SITE FOR RESIDUE FCO K 550
29DC2SOFTWAREHIS F:184 , CYS F:187 , ARG F:189 , LEU F:190 , CYS F:212 , LEU F:213 , CYS F:218 , PRO F:221BINDING SITE FOR RESIDUE SF4 F 265
30DC3SOFTWARETHR F:223 , ASN F:225 , CYS F:227 , PHE F:232 , TRP F:237 , CYS F:245 , LEU F:246 , CYS F:248 , GLN M:230BINDING SITE FOR RESIDUE F3S F 266
31DC4SOFTWAREGLU F:16 , CYS F:17 , CYS F:20 , GLY F:112 , THR F:113 , CYS F:114 , GLY F:146 , CYS F:147 , PRO F:148 , ARG M:70 , HIS M:228BINDING SITE FOR RESIDUE SF4 F 267
32DC5SOFTWARECYS M:75 , VAL M:78 , HIS M:79 , ALA M:474 , PRO M:475 , ARG M:476 , LEU M:479 , VAL M:497 , PRO M:498 , SER M:499 , CYS M:546 , NI M:551 , HOH M:557BINDING SITE FOR RESIDUE FCO M 550
33DC6SOFTWAREHIS G:184 , CYS G:187 , ARG G:189 , LEU G:190 , CYS G:212 , LEU G:213 , CYS G:218BINDING SITE FOR RESIDUE SF4 G 265
34DC7SOFTWAREASN G:225 , CYS G:227 , PRO G:238 , CYS G:245 , LEU G:246 , CYS G:248 , HOH G:5277 , LYS N:225 , GLN N:230BINDING SITE FOR RESIDUE F3S G 266
35DC8SOFTWAREGLU G:16 , CYS G:17 , CYS G:20 , THR G:113 , CYS G:114 , CYS G:147 , PRO G:148 , ARG N:70 , HIS N:228BINDING SITE FOR RESIDUE SF4 G 267
36DC9SOFTWARECYS N:75 , VAL N:78 , HIS N:79 , ALA N:474 , PRO N:475 , ARG N:476 , LEU N:479 , VAL N:497 , PRO N:498 , SER N:499 , CYS N:546 , NI N:551 , HOH N:557BINDING SITE FOR RESIDUE FCO N 550

(-) SS Bonds  (18, 18)

Asymmetric Unit
No.Residues
1H:72 -H:543
2H:75 -H:546
3H:259 -H:436
4I:72 -I:543
5I:75 -I:546
6I:259 -I:436
7J:72 -J:543
8J:75 -J:546
9J:259 -J:436
10K:72 -K:543
11K:75 -K:546
12K:259 -K:436
13M:72 -M:543
14M:75 -M:546
15M:259 -M:436
16N:72 -N:543
17N:75 -N:546
18N:259 -N:436

(-) Cis Peptide Bonds  (37, 74)

Asymmetric Unit
No.ModelResidues
11, 2Lys A:29 -Pro A:30
21, 2Lys A:124 -Pro A:125
31, 2Cys A:147 -Pro A:148
41, 2Thr A:258 -Pro A:259
51, 2Asp H:19 -Pro H:20
61, 2Asn H:226 -Pro H:227
71, 2Lys B:29 -Pro B:30
81, 2Lys B:124 -Pro B:125
91, 2Cys B:147 -Pro B:148
101, 2Thr B:258 -Pro B:259
111, 2Asp I:19 -Pro I:20
121, 2Asn I:226 -Pro I:227
131, 2Lys C:29 -Pro C:30
141, 2Lys C:124 -Pro C:125
151, 2Cys C:147 -Pro C:148
161, 2Thr C:258 -Pro C:259
171, 2Asp J:19 -Pro J:20
181, 2Asn J:226 -Pro J:227
191, 2Lys D:29 -Pro D:30
201, 2Lys D:124 -Pro D:125
211, 2Cys D:147 -Pro D:148
221, 2Thr D:258 -Pro D:259
231, 2Asp K:19 -Pro K:20
241, 2Asn K:226 -Pro K:227
251, 2Lys F:29 -Pro F:30
261, 2Lys F:124 -Pro F:125
271, 2Cys F:147 -Pro F:148
281, 2Thr F:258 -Pro F:259
291, 2Lys M:5 -Pro M:6
301, 2Asp M:19 -Pro M:20
311, 2Asn M:226 -Pro M:227
321, 2Lys G:29 -Pro G:30
331, 2Lys G:124 -Pro G:125
341, 2Cys G:147 -Pro G:148
351, 2Thr G:258 -Pro G:259
361, 2Asp N:19 -Pro N:20
371, 2Asn N:226 -Pro N:227

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1YRQ)

(-) PROSITE Motifs  (2, 12)

Asymmetric Unit (2, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NI_HGENASE_L_1PS00507 Nickel-dependent hydrogenases large subunit signature 1.PHNL_DESFR50-75
 
 
 
 
 
  6H:50-75
I:50-75
J:50-75
K:50-75
M:50-75
N:50-75
2NI_HGENASE_L_2PS00508 Nickel-dependent hydrogenases large subunit signature 2.PHNL_DESFR540-549
 
 
 
 
 
  6H:540-549
I:540-549
J:540-549
K:540-549
M:540-549
N:540-549
Biological Unit 1 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NI_HGENASE_L_1PS00507 Nickel-dependent hydrogenases large subunit signature 1.PHNL_DESFR50-75
 
 
 
 
 
  1H:50-75
-
-
-
-
-
2NI_HGENASE_L_2PS00508 Nickel-dependent hydrogenases large subunit signature 2.PHNL_DESFR540-549
 
 
 
 
 
  1H:540-549
-
-
-
-
-
Biological Unit 2 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NI_HGENASE_L_1PS00507 Nickel-dependent hydrogenases large subunit signature 1.PHNL_DESFR50-75
 
 
 
 
 
  1-
I:50-75
-
-
-
-
2NI_HGENASE_L_2PS00508 Nickel-dependent hydrogenases large subunit signature 2.PHNL_DESFR540-549
 
 
 
 
 
  1-
I:540-549
-
-
-
-
Biological Unit 3 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NI_HGENASE_L_1PS00507 Nickel-dependent hydrogenases large subunit signature 1.PHNL_DESFR50-75
 
 
 
 
 
  1-
-
J:50-75
-
-
-
2NI_HGENASE_L_2PS00508 Nickel-dependent hydrogenases large subunit signature 2.PHNL_DESFR540-549
 
 
 
 
 
  1-
-
J:540-549
-
-
-
Biological Unit 4 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NI_HGENASE_L_1PS00507 Nickel-dependent hydrogenases large subunit signature 1.PHNL_DESFR50-75
 
 
 
 
 
  1-
-
-
K:50-75
-
-
2NI_HGENASE_L_2PS00508 Nickel-dependent hydrogenases large subunit signature 2.PHNL_DESFR540-549
 
 
 
 
 
  1-
-
-
K:540-549
-
-
Biological Unit 5 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NI_HGENASE_L_1PS00507 Nickel-dependent hydrogenases large subunit signature 1.PHNL_DESFR50-75
 
 
 
 
 
  1-
-
-
-
M:50-75
-
2NI_HGENASE_L_2PS00508 Nickel-dependent hydrogenases large subunit signature 2.PHNL_DESFR540-549
 
 
 
 
 
  1-
-
-
-
M:540-549
-
Biological Unit 6 (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1NI_HGENASE_L_1PS00507 Nickel-dependent hydrogenases large subunit signature 1.PHNL_DESFR50-75
 
 
 
 
 
  1-
-
-
-
-
N:50-75
2NI_HGENASE_L_2PS00508 Nickel-dependent hydrogenases large subunit signature 2.PHNL_DESFR540-549
 
 
 
 
 
  1-
-
-
-
-
N:540-549

(-) Exons   (0, 0)

(no "Exon" information available for 1YRQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:262
 aligned with PHNS_DESFR | P18187 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:262
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  
           PHNS_DESFR    53 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 314
               SCOP domains d1yrqa_ A: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1yrqA01 A:3-178  [code=3.40.50.700, no name defined]                                                                                                                            1yrqA02 A:179-263 Cytochrome-c3 Hydrogenase, chain A, domain 2                       - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh.hhhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh.....hhhhhh.........hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq A   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  

Chain B from PDB  Type:PROTEIN  Length:262
 aligned with PHNS_DESFR | P18187 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:262
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  
           PHNS_DESFR    53 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 314
               SCOP domains d1yrqb_ B: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1yrqB01 B:3-178  [code=3.40.50.700, no name defined]                                                                                                                            1yrqB02 B:179-263 Cytochrome-c3 Hydrogenase, chain A, domain 2                       - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh.....eeeee..ee.hhhhh..ee..eehhhhhhhhhhhh..eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq B   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  

Chain C from PDB  Type:PROTEIN  Length:260
 aligned with PHNS_DESFR | P18187 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:260
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314
           PHNS_DESFR    55 HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 314
               SCOP domains d1yrqc_ C: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1yrqC01 C:5-178  [code=3.40.50.700, no name defined]                                                                                                                          1yrqC02 C:179-263 Cytochrome-c3 Hydrogenase, chain A, domain 2                       - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh.....eeeee..ee.hhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh.hhhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq C   5 HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain D from PDB  Type:PROTEIN  Length:262
 aligned with PHNS_DESFR | P18187 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:262
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  
           PHNS_DESFR    53 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 314
               SCOP domains d1yrqd_ D: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1yrqD01 D:3-178  [code=3.40.50.700, no name defined]                                                                                                                            1yrqD02 D:179-263 Cytochrome-c3 Hydrogenase, chain A, domain 2                       - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeeee......hhhhhhhhhhhhhh....eeeeee..ee.hhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh.hhhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq D   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  

Chain F from PDB  Type:PROTEIN  Length:260
 aligned with PHNS_DESFR | P18187 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:260
                                    64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314
           PHNS_DESFR    55 HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 314
               SCOP domains d1yrqf_ F: automated matches                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1yrqF01 F:5-178  [code=3.40.50.700, no name defined]                                                                                                                          1yrqF02 F:179-263 Cytochrome-c3 Hydrogenase, chain A, domain 2                       - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhhh....eeeee..ee.hhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhh........hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq F   5 HRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264

Chain G from PDB  Type:PROTEIN  Length:262
 aligned with PHNS_DESFR | P18187 from UniProtKB/Swiss-Prot  Length:314

    Alignment length:262
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312  
           PHNS_DESFR    53 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDENGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 314
               SCOP domains d1yrqg_ G: automated matches                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1yrqG01 G:3-178  [code=3.40.50.700, no name defined]                                                                                                                            1yrqG02 G:179-263 Cytochrome-c3 Hydrogenase, chain A, domain 2                       - CATH domains
           Pfam domains (1) --------------Oxidored_q6-1yrqG01 G:17-161                                                                                                                     ------------------------------------------------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) --------------Oxidored_q6-1yrqG02 G:17-161                                                                                                                     ------------------------------------------------------------------------------------------------------- Pfam domains (2)
           Pfam domains (3) --------------Oxidored_q6-1yrqG03 G:17-161                                                                                                                     ------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) --------------Oxidored_q6-1yrqG04 G:17-161                                                                                                                     ------------------------------------------------------------------------------------------------------- Pfam domains (4)
           Pfam domains (5) --------------Oxidored_q6-1yrqG05 G:17-161                                                                                                                     ------------------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) --------------Oxidored_q6-1yrqG06 G:17-161                                                                                                                     ------------------------------------------------------------------------------------------------------- Pfam domains (6)
         Sec.struct. author .....eeeeee....hhhhhhhh.....hhhhhhhhh.eeee.......hhhhhhhhhhhhhh.....eeeee..eehhhhhh..ee..eehhhhhhhhhhh...eeeehhhhhhhhhhhh......eehhhhhhh...eee.....hhhhhhhhhhhhhhh..........hhhhhh..hhhhh.hhhhhhhh.......hhhhhh...hhhhh.hhhhh..hhhhhh....................hhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq G   3 AKHRPSVVWLHNAECTGCTEAAIRTIKPYIDALILDTISLDYQETIMAAAGEAAEAALHQALEGKDGYYLVVEGGLPTIDGGQWGMVAGHPMIETTKKAAAKAKGIICIGTCSAYGGVQKAKPNPSQAKGVSEALGVKTINIPGCPPNPINFVGAVVHVLTKGIPDLDSNGRPKLFYGELVHDNCPRLPHFEASEFAPSFDSEEAKKGFCLYELGCKGPVTYNNCPKVLFNQVNWPVQAGHPCLGCSEPDFWDTMTPFYEQG 264
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262  

Chain H from PDB  Type:PROTEIN  Length:545
 aligned with PHNL_DESFR | P18188 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:545
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
           PHNL_DESFR     5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
               SCOP domains d1yrqh_ H: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1yrqH00 H:5-549 Cytochrome-c3 Hydrogenase, chain B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------NI_HGENASE_L_1            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NI_HGENASE PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq H   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     

Chain I from PDB  Type:PROTEIN  Length:545
 aligned with PHNL_DESFR | P18188 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:545
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
           PHNL_DESFR     5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
               SCOP domains d1yrqi_ I: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1yrqI00 I:5-549 Cytochrome-c3 Hydrogenase, chain B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------NI_HGENASE_L_1            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NI_HGENASE PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq I   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     

Chain J from PDB  Type:PROTEIN  Length:544
 aligned with PHNL_DESFR | P18188 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:544
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    
           PHNL_DESFR     6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
               SCOP domains d1yrqj_ J: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1yrqJ00 J:6-549 Cytochrome-c3 Hydrogenase, chain B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........eeeeeeee..eeeeeeeee....hhhhhh...hhhhhhhhhhh......hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh...hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------NI_HGENASE_L_1            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NI_HGENASE PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq J   6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    

Chain K from PDB  Type:PROTEIN  Length:544
 aligned with PHNL_DESFR | P18188 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:544
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    
           PHNL_DESFR     6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
               SCOP domains d1yrqk_ K: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1yrqK00 K:6-549 Cytochrome-c3 Hydrogenase, chain B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------NI_HGENASE_L_1            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NI_HGENASE PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq K   6 PTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545    

Chain M from PDB  Type:PROTEIN  Length:545
 aligned with PHNL_DESFR | P18188 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:545
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
           PHNL_DESFR     5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
               SCOP domains d1yrqm_ M: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1yrqM00 M:5-549 Cytochrome-c3 Hydrogenase, chain B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee..eee....hhhhhhhheee..eeee..........hhh.eeee.............hhhhh...................eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhh..........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------NI_HGENASE_L_1            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NI_HGENASE PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq M   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     

Chain N from PDB  Type:PROTEIN  Length:545
 aligned with PHNL_DESFR | P18188 from UniProtKB/Swiss-Prot  Length:564

    Alignment length:545
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     
           PHNL_DESFR     5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVDLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPEKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
               SCOP domains d1yrqn_ N: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 1yrqN00 N:5-549 Cytochrome-c3 Hydrogenase, chain B                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATH domains
           Pfam domains (1) ---------------------------------------------NiFeSe_Hases-1yrqN01 N:50-549                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (1)
           Pfam domains (2) ---------------------------------------------NiFeSe_Hases-1yrqN02 N:50-549                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (2)
           Pfam domains (3) ---------------------------------------------NiFeSe_Hases-1yrqN03 N:50-549                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (3)
           Pfam domains (4) ---------------------------------------------NiFeSe_Hases-1yrqN04 N:50-549                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (4)
           Pfam domains (5) ---------------------------------------------NiFeSe_Hases-1yrqN05 N:50-549                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (5)
           Pfam domains (6) ---------------------------------------------NiFeSe_Hases-1yrqN06 N:50-549                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        Pfam domains (6)
         Sec.struct. author .........eeeee.........eeeeeeee..eeeeeeeee....hhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh.hhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......ee..ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee....hhhhhhhheee..eee...............eeee.............hhhhh...................eeee.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........eeeeeeeeee..eeeeeeeeee..eeeeeeeehhhhhhhh........hhhhhhhh.........hhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------NI_HGENASE_L_1            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NI_HGENASE PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1yrq N   5 KPTPQSTFTGPIVVDPITRIEGHLRIMVEVENGKVKDAWSSSQLFRGLEIILKGRDPRDAQHFTQRACGVCTYVHALASSRCVDDAVKVSIPANARMMRNLVMASQYLHDHLVHFYHLHALDWVDVTAALKADPNKAAKLAASIAPARPGNSAKALKAVQDKLKAFVESGQLGIFTNAYFLGGHKAYYLPPEVNLIATAHYLEALHMQVKAASAMAILGGKNPHTQFTVVGGCSNYQGLTKDPLANYLALSKEVCQFVNECYIPDLLAVAGFYKDWGGIGGTSNYLAFGEFATDDSSPSKHLATSQFPSGVITGRDLGKVDNVDLGAIYEDVKYSWYAPGGDGKHPYDGVTDPKYTKLDDKDHYSWMKAPRYKGKAMEVGPLARTFIAYAKGQPDFKKVVDMVLGKLSVPATALHSTLGRTAARGIETAIVCANMEKWIKEMADSGAKDNTLCAKWEMPEESKGVGLADAPRGALSHWIRIKGKKIDNFQLVVPSTWNLGPRGAQGDKSPVEEALIGTPIADPKRPVEILRTVHAFDPCIACGVH 549
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric Unit

(-) CATH Domains  (3, 18)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 12)

Asymmetric Unit

(-) Gene Ontology  (11, 17)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,F,G   (PHNS_DESFR | P18187)
molecular function
    GO:0051538    3 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 3 iron, 4 sulfur (3Fe-4S) cluster; this cluster consists of three iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. It is essentially a 4Fe-4S cluster with one iron missing.
    GO:0051539    4 iron, 4 sulfur cluster binding    Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
    GO:0047806    cytochrome-c3 hydrogenase activity    Catalysis of the reaction: 2 H2 + ferricytochrome c3 = 4 H+ + ferrocytochrome c3.
    GO:0008901    ferredoxin hydrogenase activity    Catalysis of the reaction: 2 reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2.
    GO:0051536    iron-sulfur cluster binding    Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0009375    ferredoxin hydrogenase complex    An enzyme complex that catalyzes the oxidation of reduced ferredoxin. Hydrogenase contains iron-sulfur clusters, and some contain nickel; it can use molecular hydrogen for the reduction of a variety of substances.
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain H,I,J,K,M,N   (PHNL_DESFR | P18188)
molecular function
    GO:0047806    cytochrome-c3 hydrogenase activity    Catalysis of the reaction: 2 H2 + ferricytochrome c3 = 4 H+ + ferrocytochrome c3.
    GO:0008901    ferredoxin hydrogenase activity    Catalysis of the reaction: 2 reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016151    nickel cation binding    Interacting selectively and non-covalently with nickel (Ni) cations.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0042597    periplasmic space    The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PHNL_DESFR | P181881frf 1yqw 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4uew 4upe 4upv 4uql 4uqp 4urh
        PHNS_DESFR | P181871frf 1yqw 3cur 3cus 3h3x 4ucq 4ucw 4ucx 4ue2 4ue6 4uew 4upe 4upv 4uql 4uqp 4urh

(-) Related Entries Specified in the PDB File

1frf CRYSTAL STRUCTURE OF THE NI-FE HYDROGENASE FROM DESULFOVIBRIO FRUCTOSOVORANS
1yqw STRUCTURE OF THE UNREADY OXIDIZED FORM OF [NIFE]-HYDROGENASE