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(-) Description

Title :  NMR STRUCTURE OF THE CARBOXYL-TERMINAL CYSTEINE DOMAIN OF THE VHV1.1 POLYDNAVIRAL GENE PRODUCT
 
Authors :  J. Einerwold, M. Jaseja, K. Hapner, B. Webb, V. Copie
Date :  21 Sep 04  (Deposition) - 05 Oct 04  (Release) - 10 Aug 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
NMR Structure *:  A  (1x)
Keywords :  Cystine Knot, Antiparallel Beta Sheet Structural Scaffold, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Einerwold, M. Jaseja, K. Hapner, B. Webb, V. Copie
Solution Structure Of The Carboxyl-Terminal Cysteine-Rich Domain Of The Vhv1. 1 Polydnaviral Gene Product: Comparison With Other Cystine Knot Structural Folds
Biochemistry V. 40 14404 2001
PubMed-ID: 11724552  |  Reference-DOI: 10.1021/BI011499S

(-) Compounds

Molecule 1 - CYSTEINE-RICH OMEGA-CONOTOXIN HOMOLOG VHV1.1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-32B(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL CYSTEINE-RICH DOMAIN
    Gene: PVX900 CLONE
    Organism Scientific: CAMPOLETIS SONORENSIS ICHNOVIRUS
    Organism Taxid: 10484
    Synonym: VHV1.1 PROTEIN

 Structural Features

(-) Chains, Units

  1
NMR Structure : A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1XI7)

(-) Sites  (0, 0)

(no "Site" information available for 1XI7)

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:7 -A:22
2A:14 -A:39
3A:21 -A:47

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1XI7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1XI7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1XI7)

(-) Exons   (0, 0)

(no "Exon" information available for 1XI7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:47
 aligned with Q89632_CSIV | Q89632 from UniProtKB/TrEMBL  Length:217

    Alignment length:47
                                   171       181       191       201       
          Q89632_CSIV   162 TCIGHYQKCVNADKPCCSKTVRYGDSKNVRKFICDRDGEGVCVPFDG 208
               SCOP domains d1xi7a_ A: Vhv1.1, polydnaviral gene product    SCOP domains
               CATH domains ----------------------------------------------- CATH domains
               Pfam domains Viral_cys_rich-1xi7A01 A:6-52                   Pfam domains
         Sec.struct. author ......ee..........eee......eeeeeeee.....eeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------- PROSITE
                 Transcript ----------------------------------------------- Transcript
                 1xi7 A   6 TCIGHYQKCVNADKPCCSKTVRYGDSKNVRKFICDRDGEGVCVPFDG  52
                                    15        25        35        45
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1XI7)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Viral_cys_rich] (2)

(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
    (no "Gene Ontology" information available for 1XI7)

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  1xi7
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  Q89632_CSIV | Q89632
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q89632_CSIV | Q89632: 1xj1

(-) Related Entries Specified in the PDB File

1xj1 25 ENSEMBLE STRUCTURES