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(-) Description

Title :  NMR SOLUTION STRUCTURES OF A DNA DODECAMER CONTAINING A TANDEM GT MISMATCHES USING NOE AND RESIDUAL DIPOLAR COUPLINGS
 
Authors :  F. Alvarez-Salgado, H. Desvaux, Y. Boulard
Date :  26 Apr 05  (Deposition) - 01 Aug 06  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
Keywords :  Nmr, Rdc, Deoxyribonucleic Acid, Liquid Crystal, Tandem Gt Mismatches, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Alvarez-Salgado, H. Desvaux, Y. Boulard
Nmr Assessment Of The Global Shape Of A Non-Labelled Dna Dodecamer Containing A Tandem Of G--T Mismatches
Magn. Reson. Chem. V. 44 1081 2006
PubMed-ID: 16972306  |  Reference-DOI: 10.1002/MRC.1902
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*GP*AP*CP*TP*GP*TP*GP*CP*AP*GP*TP*C)-3'
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

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NMR Structure 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:12
                                           
                  1x2z A  1 GACTGTGCAGTC 12
                                    10  

Chain B from PDB  Type:DNA  Length:12
                                           
                  1x2z B 13 GACTGTGCAGTC 24
                                    22  

   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

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NMR Structure(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1x2o RDCS WERE MEASURED IN BICELLES SDS SOLUTION
1x2s RDCS WERE MEASURED IN PF1 SOLUTION
1x2u RDCS WERE MEASURED IN PEG SOLUTION
1x2v THIS STRUCTURE IS THE WILD DNA SEQUENCE (WITHOUT MISMATCH) THAT SERVES AS REFERENCE
1x2x RDCS WERE MEASURED IN BICELLES SDS SOLUTION, A TANDEM GT MISMATCHES
1x2y RDCS WERE MEASURED IN PF1 SOLUTION, A TANDEM GT MISMATCHES
1x30 THIS STRUCTURE CONTAINS A TANDEM GT MISMATCHES