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(-) Description

Title :  SOLUTION STRUCTURE OF THE RING FINGER DOMAIN OF THE HUMAN KIAA1045 PROTEIN
 
Authors :  K. Miyamoto, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  28 May 04  (Deposition) - 28 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ring Finger Domain, Kiaa1045 Protein, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Miyamoto, N. Tochio, S. Koshiba, M. Inoue, T. Kigawa, S. Yokoyama
Solution Structure Of The Ring Finger Domain Of The Human Kiaa1045 Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - KIAA1045 PROTEIN
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030609-29
    Expression System Vector Type: PLASMID
    Fragment: RING FINGER DOMAIN
    Gene: KAZUSA CDNA HH00656
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:18 , CYS A:21 , HIS A:40 , CYS A:43BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:32 , CYS A:35 , CYS A:70 , CYS A:73BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WIL)

(-) Cis Peptide Bonds  (1, 20)

NMR Structure
No.ModelResidues
11, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20Phe A:30 -Pro A:31

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WIL)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_PHD_1PS01359 Zinc finger PHD-type signature.PHF24_HUMAN133-188  1A:18-73

(-) Exons   (4, 4)

NMR Structure (4, 4)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2bENST000002423152bENSE00001902168chr9:34958321-3495839878PHF24_HUMAN-00--
1.3cENST000002423153cENSE00000697637chr9:34971292-34971673382PHF24_HUMAN1-1261261A:1-11 (gaps)63
1.4aENST000002423154aENSE00000832961chr9:34972343-34972528186PHF24_HUMAN127-188621A:12-7362
1.5ENST000002423155ENSE00000832962chr9:34976149-3497622779PHF24_HUMAN189-215271A:74-87 (gaps)27
1.6ENST000002423156ENSE00000697641chr9:34976532-34976737206PHF24_HUMAN215-283691A:87-893
1.7ENST000002423157ENSE00000697643chr9:34977080-34977240161PHF24_HUMAN284-337540--
1.8ENST000002423158ENSE00000832963chr9:34977543-3497763896PHF24_HUMAN337-369330--
1.9bENST000002423159bENSE00000832966chr9:34978012-349825414530PHF24_HUMAN369-400320--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:89
 aligned with PHF24_HUMAN | Q9UPV7 from UniProtKB/Swiss-Prot  Length:400

    Alignment length:154
                                    73        83        93       103       113       123       133       143       153       163       173       183       193       203       213    
          PHF24_HUMAN    64 GTSVVQEESSAGRAAWERLRDGRGVEPEEFDRTSRFTPPAFIRPTRKLDDDKPPEICLEPREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEEEMYSLTETFQRCKVIPDCS 217
               SCOP domains d1w     ila_                                                A: Hypothetical protein KIAA1045                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...-----....-----------------------------------------------.................................hhhhhhh......................................-------------.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------ZF_PHD_1  PDB: A:18-73 UniProt: 133-188                 ----------------------------- PROSITE
           Transcript 1 (1) Exon 1.3c  PDB: A:1-11 (gaps) UniProt: 1-126 [INCOMPLETE]      Exon 1.4a  PDB: A:12-73 UniProt: 127-188                      Exon 1.5 UniProt: 189-215  -- Transcript 1 (1)
           Transcript 1 (2) -------------------------------------------------------------------------------------------------------------------------------------------------------1.6 Transcript 1 (2)
                 1wil A   1 GSS-----GSSG-----------------------------------------------PREPVVNDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINLLLTEESG-------------PSSG  89
                              |     |5 |       -         -         -         -         8        18        28        38        48        58        68        78      |  -         -|   
                              3     4  7                                               8                                                                           85            86
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WIL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WIL)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (PHF24_HUMAN | Q9UPV7)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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