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(-) Description

Title :  STRUCTURE OF A POSSIBLE URIDINE KINASE FROM BACILLUS STEAROTHERMOPHILUS
 
Authors :  M. E. Cuff, A. Joachimiak, R. -Y. Wu, Midwest Center For Structural Genomics (Mcsg)
Date :  23 Dec 03  (Deposition) - 04 May 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Bacillus Stearothermophilus, Mcsg, Structural Genomics, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, A. Joachimiak, R. -Y. Wu
Structure Of Hypothetical Protein Rbstp0775 From Bacillus Stearothermophilus
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN RBSTP0775
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: RBSTP0775
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:121 , SER A:123 , ASP A:124 , ASP A:194 , CA A:555 , HOH A:658 , HOH A:665 , HOH A:670 , HOH A:755 , HOH A:782BINDING SITE FOR RESIDUE ACT A 655
2AC2SOFTWAREASP A:124 , ACT A:655 , HOH A:658 , HOH A:663 , HOH A:665 , HOH A:666 , HOH A:670 , HOH A:693 , HOH A:794BINDING SITE FOR RESIDUE CA A 555

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RZ3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RZ3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RZ3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RZ3)

(-) Exons   (0, 0)

(no "Exon" information available for 1RZ3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:184
 aligned with P84134_GEOSE | P84134 from UniProtKB/TrEMBL  Length:201

    Alignment length:198
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190        
         P84134_GEOSE     1 MELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDYYLETEEPIKRADVVFD 198
               SCOP domains d1rz3a_ A: Hypothetical protein rbstp0775                                                                                                                                                              SCOP domains
               CATH domains -1rz3A00 A:2-198 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                  CATH domains
               Pfam domains -----------------------PRK-1rz3A01 A:24-197                                                                                                                                                          - Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhhh...eeeee.hhhh.hhhhhh....hhhhhhhhh..hhhhhhhhhhhhh....eeeeeeee....eeeeeeee.....eeeeee.......hhhhh.eeeee...--------------hhhhhhhhhhhhhhhhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rz3 A   1 mELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHmDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDmImIEGVFLQRKEWRPFFDFVVYLDCP--------------NIQKFINRYWKAEDYYLETEEPIKRADVVFD 198
                            |       10        20        30        40        50       |60        70        80        90       100       110       120      |130       140       150  |      -       170       180       190        
                            |                                                       58-MSE                                                              127-MSE                   153            168                              
                            1-MSE                                                                                                                         129-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (P84134_GEOSE | P84134)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

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