1RH7 - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF RESISTIN-LIKE BETA

Authors :   S. D. Patel, M. W. Rajala, P. E. Scherer, L. Shapiro, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   13 Nov 03 (Deposition) - 08 Jun 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.11

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)
Biol. Unit 3: A,B,C,D,E,F  (1x)

Keywords :   Hormone; Glucose Uptake; Resistin/Fizz Family, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hormone/Growth Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. D. Patel, M. W. Rajala, L. Rossetti, P. E. Scherer, L. Shapiro
Disulfide-Dependent Multimeric Assembly Of Resistin Family Hormones
Science V. 304 1154 2004
PubMed-ID: 15155948 | Reference-DOI: 10.1126/SCIENCE.1093466
(for further references see the PDB file header)

Molecule 1 - RESISTIN-LIKE BETA
	Chains	:	A, B, C, D, E, F
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Common	:	HUMAN
	Expression System Plasmid	:	PFM1
	Expression System Taxid	:	9606
	Expression System Vector Type	:	PLASMID
	Gene	:	RETNLB OR FIZZ2
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	RELMBETA; CYSTEINE-RICH SECRETED PROTEIN FIZZ2

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F
Biological Unit 3 (1x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	P6G	2	Ligand/Ion	HEXAETHYLENE GLYCOL
2	PT	6	Ligand/Ion	PLATINUM (II) ION

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	P6G	2	Ligand/Ion	HEXAETHYLENE GLYCOL
2	PT	-1	Ligand/Ion	PLATINUM (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	P6G	-1	Ligand/Ion	HEXAETHYLENE GLYCOL
2	PT	-1	Ligand/Ion	PLATINUM (II) ION

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	P6G	2	Ligand/Ion	HEXAETHYLENE GLYCOL
2	PT	-1	Ligand/Ion	PLATINUM (II) ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:42	BINDING SITE FOR RESIDUE PT A 501
2	AC2	SOFTWARE	MET B:42	BINDING SITE FOR RESIDUE PT B 502
3	AC3	SOFTWARE	MET C:42	BINDING SITE FOR RESIDUE PT C 503
4	AC4	SOFTWARE	MET D:42 , ARG D:80	BINDING SITE FOR RESIDUE PT D 504
5	AC5	SOFTWARE	MET E:42	BINDING SITE FOR RESIDUE PT E 505
6	AC6	SOFTWARE	MET F:42	BINDING SITE FOR RESIDUE PT F 506
7	AC7	SOFTWARE	ASP A:57 , GLN A:67 , THR C:27 , SER C:28	BINDING SITE FOR RESIDUE P6G C 601
8	AC8	SOFTWARE	GLY B:33 , ARG B:34 , ARG E:34 , LEU E:35 , ARG E:59 , ASN E:60 , THR E:63 , HIS E:65	BINDING SITE FOR RESIDUE P6G B 602

Asymmetric Unit

No.	Residues
1	A:26	-	A:79
2	A:38	-	A:78
3	A:47	-	A:64
4	A:49	-	A:66
5	A:53	-	A:68
6	B:26	-	B:79
7	B:38	-	B:78
8	B:47	-	B:64
9	B:49	-	B:66
10	B:53	-	B:68
11	C:2	-	F:2
12	C:26	-	C:79
13	C:38	-	C:78
14	C:47	-	C:64
15	C:49	-	C:66
16	C:53	-	C:68
17	D:26	-	D:79
18	D:38	-	D:78
19	D:47	-	D:64
20	D:49	-	D:66
21	D:53	-	D:68
22	E:26	-	E:79
23	E:38	-	E:78
24	E:47	-	E:64
25	E:49	-	E:66
26	E:53	-	E:68
27	F:26	-	F:79
28	F:38	-	F:78
29	F:47	-	F:64
30	F:49	-	F:66
31	F:53	-	F:68

(no "Cis Peptide Bond" information available for 1RH7)

(no "SAP(SNP)/Variant" information available for 1RH7)

(no "PROSITE Motif" information available for 1RH7)

(no "Exon" information available for 1RH7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:81
 aligned with RETNB_MOUSE | Q99P86 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:81
                                    34        44        54        64        74        84        94       104 
          RETNB_MOUSE    25 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA 105
               SCOP domains d1rh7a_ A: Resistin-like beta (FIZZ2)                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh.........eeeeeeeeee..eee.....eeeeeee.hhh..eeee...eeee......eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 1rh7 A   2 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA  82
                                    11        21        31        41        51        61        71        81

Chain B from PDB  Type:PROTEIN  Length:81
 aligned with RETNB_MOUSE | Q99P86 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:81
                                    34        44        54        64        74        84        94       104 
          RETNB_MOUSE    25 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA 105
               SCOP domains d1rh7b_ B: Resistin-like beta (FIZZ2)                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.......eeeeeeeee..eee.....eeeeeee......eeee...eeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 1rh7 B   2 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA  82
                                    11        21        31        41        51        61        71        81

Chain C from PDB  Type:PROTEIN  Length:81
 aligned with RETNB_MOUSE | Q99P86 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:81
                                    34        44        54        64        74        84        94       104 
          RETNB_MOUSE    25 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA 105
               SCOP domains d1rh7c_ C: Resistin-like beta (FIZZ2)                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh......eeeeeeeeee..eee.....eeeeeee......eeee...eeee......eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 1rh7 C   2 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA  82
                                    11        21        31        41        51        61        71        81

Chain D from PDB  Type:PROTEIN  Length:81
 aligned with RETNB_MOUSE | Q99P86 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:81
                                    34        44        54        64        74        84        94       104 
          RETNB_MOUSE    25 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA 105
               SCOP domains d1rh7d_ D: Resistin-like beta (FIZZ2)                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...........eeeeee.....eee.....eeeeeee......eeee...eeee.......eeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 1rh7 D   2 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA  82
                                    11        21        31        41        51        61        71        81

Chain E from PDB  Type:PROTEIN  Length:81
 aligned with RETNB_MOUSE | Q99P86 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:81
                                    34        44        54        64        74        84        94       104 
          RETNB_MOUSE    25 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA 105
               SCOP domains d1rh7e_ E: Resistin-like beta (FIZZ2)                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhh....eeeeeeeeee..eee.....eeeeeee......eeee...eeee......eeeeeeeeee Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 1rh7 E   2 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA  82
                                    11        21        31        41        51        61        71        81

Chain F from PDB  Type:PROTEIN  Length:81
 aligned with RETNB_MOUSE | Q99P86 from UniProtKB/Swiss-Prot  Length:105

    Alignment length:81
                                    34        44        54        64        74        84        94       104 
          RETNB_MOUSE    25 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA 105
               SCOP domains d1rh7f_ F: Resistin-like beta (FIZZ2)                                             SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Resistin-1rh7F01 F:2-81                                                         - Pfam domains (1)
           Pfam domains (2) Resistin-1rh7F02 F:2-81                                                         - Pfam domains (2)
           Pfam domains (3) Resistin-1rh7F03 F:2-81                                                         - Pfam domains (3)
           Pfam domains (4) Resistin-1rh7F04 F:2-81                                                         - Pfam domains (4)
           Pfam domains (5) Resistin-1rh7F05 F:2-81                                                         - Pfam domains (5)
           Pfam domains (6) Resistin-1rh7F06 F:2-81                                                         - Pfam domains (6)
         Sec.struct. author ..hhhhhhhhhhhhhhhh....eeeeeeeee..eee.....eeeeeee......eee....eeee......eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 1rh7 F   2 CSFESLVDQRIKEALSRQEPKTISCTSVTSSGRLASCPAGMVVTGCACGYGCGSWDIRNGNTCHCQCSVMDWASARCCRMA  82
                                    11        21        31        41        51        61        71        81

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Small proteins (3458)

Fold: Resistin (3)

Superfamily: Resistin (3)

Family: Resistin (3)

Protein domain: Resistin-like beta (FIZZ2) (1)

Mouse (Mus musculus) [TaxId: 10090] (1)

1a	d1rh7a_	A:
1b	d1rh7b_	B:
1c	d1rh7c_	C:
1d	d1rh7d_	D:
1e	d1rh7e_	E:
1f	d1rh7f_	F:

(no "CATH Domain" information available for 1RH7)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Resistin] (3)

Family: Resistin (3)

Mus musculus (Mouse) (3)

1a	Resistin-1rh7F01	F:2-81
1b	Resistin-1rh7F02	F:2-81
1c	Resistin-1rh7F03	F:2-81
1d	Resistin-1rh7F04	F:2-81
1e	Resistin-1rh7F05	F:2-81
1f	Resistin-1rh7F06	F:2-81

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (RETNB_MOUSE | Q99P86)

molecular function
	GO:0005179	hormone activity	The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Asymmetric Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1rh7)

Biological Units
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	1rh7
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1rfx
1rgx	RELATED ID: NYSGXRC-T756 RELATED DB: TARGETDB

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (31, 31)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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