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(-) Description

Title :  NMR STRUCUTRE OF 5'-R(GGACACGAAAUCCCGAAGUAGUGUCC)-3' : AN RNA HAIRPIN CONTAINING THE IN VITRO SELECTED CONSENSUS SEQUENCE FOR NUCLEOLIN RBD12
 
Authors :  L. D. Finger, L. Trantirek, C. Johansson, J. Feigon
Date :  01 Sep 03  (Deposition) - 25 Nov 03  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (17x)
Keywords :  A-Form Helix, Loop E Motif, S-Turn, Disordered Hairpin Loop, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. D. Finger, L. Trantirek, C. Johansson, J. Feigon
Solution Structures Of Stem-Loop Rnas That Bind The Two N-Terminal Rna-Binding Domains Of Nucleolin
Nucleic Acids Res. V. 31 6461 2003
PubMed-ID: 14602904  |  Reference-DOI: 10.1093/NAR/GKG866
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SNRE26
    ChainsA
    EngineeredYES
    Other DetailsRNA CONTAINS THE CONSENSUS SEQUENCE FOR THE IN VITRO SELECTED NRE.
    Other Details - SourceRNA WAS PREPARED BY IN VITRO TRANSCRIPTION WITH T7 RNA POLYMERASE
    SyntheticYES

 Structural Features

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NMR Structure (17x)

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

NMR Structure
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Chain A from PDB  Type:RNA  Length:26
                                                         
                  1qwb A  1 GGACACGAAAUCCCGAAGUAGUGUCC 26
                                    10        20      

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 Classification and Annotation

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NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1ie1 NMR SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY HAMSTER NUCLEOLIN RBD12.
1ie2 SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY RBD12 OF HAMSTER NUCLEOLIN. SNRE (ANTI)
1qwa NMR STRUCTURE OF 5'-R(GGAUGCCUCCCGAGUGCAUCC): AN RNA HAIRPIN DERIVED FROM THE MOUSE 5'ETS THAT BINDS NUCLEOLIN RBD12.