1N4B - JenaLib

Title :   SOLUTION STRUCTURE OF THE UNDECAMER CGAAAC*TTTCG

Authors :   M. Webba Da Silva, A. M. Noronha, D. M. Noll, P. S. Miller, O. M. Colvin, M. P. Gamcsik

Date :   30 Oct 02 (Deposition) - 04 Nov 03 (Release) - 25 Jun 14 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B
NMR Structure *: A,B  (1x)

Keywords :   Interstrand Cross-Link, Alkylated Dna, Modified Cytosine, Alkylated Cytosine, Dna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Webba Da Silva, A. M. Noronha, D. M. Noll, P. S. Miller, O. M. Colvin M. P. Gamcsik
Solution Structure Of A Dna Duplex Containing Mispair-Aligned N4C-Ethyl-N4C Interstrand Cross-Linked Cytosines
Biochemistry V. 41 15181 2002
PubMed-ID: 12484755 | Reference-DOI: 10.1021/BI026368L

Compounds

*Molecule 1 - 5'-D(CPGPAPAPAPCPTPTPTPCPG)-3'**
	Chains	:	A
	Engineered	:	YES
	Other Details	:	INTERSTRAND CROSS-LINKED DNA
	Synthetic	:	YES

*Molecule 2 - 5'-D(CPGPAPAPAPD00TPTPTPCPG)-3'**
	Chains	:	B
	Engineered	:	YES
	Other Details	:	INTERSTRAND CROSS-LINKED DNA
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 1)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:DNA  Length:11
                                          
                  1n4b A  1 CGAAACTTTCG 11
                                    10

Chain B from PDB  Type:DNA  Length:11
                                          
                  1n4b B  1 CGAAAcTTTCG 11
                                 |  10 
                                 6-D00

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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