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Title :  A THEORETICAL MODEL OF LUTROPIN BETACHAIN PRECURSOR (HUMAN)
 
Authors :  R. Ravulapalli, S. Muruganantham
Date :  26 Jul 02  (Deposition) - 14 Aug 02  (Release) - 14 Aug 02  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Hormone, Glycoprotein, Signal, Pseudohermaphroditism, Disease Mutation (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  R. Ravulapalli, S. Muruganantham
A Theoretical Model Of Lutropin Betachain Precursor (Human)
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUTROPIN BETA CHAIN
    ChainsA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS

 Structural Features

(-) Chains, Units

  
Theoretical Model 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M92)

(-) Sites  (0, 0)

(no "Site" information available for 1M92)

(-) SS Bonds  (6, 6)

Theoretical Model
No.Residues
1A:29 -A:77
2A:43 -A:92
3A:46 -A:130
4A:54 -A:108
5A:58 -A:110
6A:113 -A:120

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M92)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (6, 6)

Theoretical Model (6, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_034098M15ILSHB_HUMANPolymorphism34247911AM15I
2UniProtVAR_015672A18TLSHB_HUMANPolymorphism5030775AA18T
3UniProtVAR_014589W28RLSHB_HUMANPolymorphism1800447AW28R
4UniProtVAR_014590I35TLSHB_HUMANPolymorphism34349826AI35T
5UniProtVAR_003189Q74RLSHB_HUMANDisease (HH23)5030773AQ74R
6UniProtVAR_015673G122SLSHB_HUMANPolymorphism5030774AG122S

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Theoretical Model (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCO_HORMONE_BETA_1PS00261 Glycoprotein hormones beta chain signature 1.LSHB_HUMAN54-60  1A:54-60
2GLYCO_HORMONE_BETA_2PS00689 Glycoprotein hormones beta chain signature 2.LSHB_HUMAN103-130  1A:103-130

(-) Exons   (3, 3)

Theoretical Model (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002214211ENSE00001225222chr19:49520347-4952032424LSHB_HUMAN1-551A:1-55
1.2ENST000002214212ENSE00001668106chr19:49519971-49519804168LSHB_HUMAN6-61561A:6-6156
1.3bENST000002214213bENSE00001129751chr19:49519567-49519237331LSHB_HUMAN62-141801A:62-14180

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with LSHB_HUMAN | P01229 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 
           LSHB_HUMAN     1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKDHPLTCDHPQLSGLLFL 141
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................eeeeeeeee........eeeeeeeee...................eeeeeeeeeeeeee..........eeeeeeeeeeeeee............................. Sec.struct. author
                 SAPs(SNPs) --------------I--T---------R------T--------------------------------------R-----------------------------------------------S------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------GLYCO_H------------------------------------------GLYCO_HORMONE_BETA_2        ----------- PROSITE
               Transcript 1 1.1  Exon 1.2  PDB: A:6-61 UniProt: 6-61                     Exon 1.3b  PDB: A:62-141 UniProt: 62-141                                         Transcript 1
                 1m92 A   1 MEMLQGLLLLLLLSMGGAWASREPLRPWCHPINAILAVEKEGCPVCITVNTTICAGYCPTMMRVLQAVLPPLPQVVCTYRDVRFESIRLPGCPRGVDPVVSFPVALSCRCGPCRRSTSDCGGPKDHPLTCDHPQLSGLLFL 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1M92)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1M92)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1M92)

(-) Gene Ontology  (10, 10)

Theoretical Model(hide GO term definitions)
Chain A   (LSHB_HUMAN | P01229)
molecular function
    GO:0005179    hormone activity    The action characteristic of a hormone, any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. The term was originally applied to agents with a stimulatory physiological action in vertebrate animals (as opposed to a chalone, which has a depressant action). Usage is now extended to regulatory compounds in lower animals and plants, and to synthetic substances having comparable effects; all bind receptors and trigger some biological process.
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
biological process
    GO:0007267    cell-cell signaling    Any process that mediates the transfer of information from one cell to another. This process includes signal transduction in the receiving cell and, where applicable, release of a ligand and any processes that actively facilitate its transport and presentation to the receiving cell. Examples include signaling via soluble ligands, via cell adhesion molecules and via gap junctions.
    GO:0008584    male gonad development    The process whose specific outcome is the progression of the male gonad over time, from its formation to the mature structure.
    GO:0016486    peptide hormone processing    The generation of a mature peptide hormone by posttranslational processing of a prohormone.
    GO:0006701    progesterone biosynthetic process    The chemical reactions and pathways resulting in the formation of progesterone, a steroid hormone produced in the ovary which prepares and maintains the uterus for pregnancy. Also found in plants.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
    GO:0005796    Golgi lumen    The volume enclosed by the membranes of any cisterna or subcompartment of the Golgi apparatus, including the cis- and trans-Golgi networks.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1fl7 1FL7 CONTAINS HUMAN FOLLICLE STIMULATING HORMONE
1hrp 1HRP CONTAINS HUMAN CHORIONIC GONADOTROPIN