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Title :  THEORETICAL MODEL OF PUTATIVE DETHIOBIOTIN SYNTHETASE
 
Authors :  N. R. Narasimham, S. C. Mallena
Date :  12 Jun 02  (Deposition) - 03 Jul 02  (Release) - 03 Jul 02  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A
Keywords :  Hypothetical Protein, Complete Proteome. (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. R. Narasimham, S. C. Mallena
Theoretical Model Of Putative Dethiobiotin Synthetase
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PUTATIVE DETHIOBIOTIN SYNTHETASE
    Chains: A
    EC Number: 6.3.3.3
    Organism Common: BACTERIA
    Organism Scientific: YERSINIA PSEUDOTUBERCULOSIS

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1M0A)

(-) Sites  (0, 0)

(no "Site" information available for 1M0A)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1M0A)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1M0A)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1M0A)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1M0A)

(-) Exons   (0, 0)

(no "Exon" information available for 1M0A)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:222
 aligned with BIOD_YERPS | P69954 from UniProtKB/Swiss-Prot  Length:222

    Alignment length:222
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220  
           BIOD_YERPS     1 MLTRLFVTGTDTAVGKTVVSRALLQALSQNGRTAVGYKPVATESKETSEGLRNQDALILQASSSIELNYQEVNPYPLQGDVIHACTDTLINYEKMTEGLQCLSAKADTVIVEGCGGWKVMMNDQRFYSDWVVQEQLPVILVVGIKLGCINHALLTAQAIINDGLPLLGWVANRINPGLAHYAETIAMLRDRLAAPQLGQLPYLPRPEEKPLAKYLDLTAISG 222
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee.....hhhhhhhhhhhhhhhhh..eeee...............hhhhhhhhhhh....hhhhhh....hhhhhhhhhh...hhhhhhhhhhhhhhhh.eeeee.............hhhhhhhhhh..eeeeee...hhhhhhhhhhhhhhhhh..eeeeeee.......hhhhhhhhhhhhh...eeeee...........hhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1m0a A   1 MLTRLFVTGTDTAVGKTVVSRALLQALSQNGRTAVGYKPVATESKETSEGLRNQDALILQASSSIELNYQEVNPYPLQGDVIHACTDTLINYEKMTEGLQCLSAKADTVIVEGCGGWKVMMNDQRFYSDWVVQEQLPVILVVGIKLGCINHALLTAQAIINDGLPLLGWVANRINPGLAHYAETIAMLRDRLAAPQLGQLPYLPRPEEKPLAKYLDLTAISG 222
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1M0A)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1M0A)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1M0A)

(-) Gene Ontology  (8, 8)

Theoretical Model(hide GO term definitions)
Chain A   (BIOD_YERPS | P69954)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004141    dethiobiotin synthase activity    Catalysis of the reaction: 7,8-diaminononanoate + ATP + CO(2) = ADP + dethiobiotin + 4 H(+) + phosphate.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009102    biotin biosynthetic process    The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

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(-) Related Entries Specified in the PDB File

1dae DETHIOBIOTIN SYNTHETASE COMPLEXED WITH 3-(1-AMINOETHYL) NONANEDIOIC ACID