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(-) Description

Title :  RELATIONSHIP OF SOLUTION AND PROTEIN-BOUND STRUCTURES OF DNA DUPLEXES WITH THE MAJOR INTRASTRAND CROSS-LINK LESIONS FORMED ON CISPLATIN BINDING TO DNA
 
Authors :  L. G. Marzilli, J. S. Saad, Z. Kuklenyik, K. A. Keating, Y. Xu
Date :  11 Jan 02  (Deposition) - 17 Jan 02  (Release) - 13 Jul 11  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B
NMR Structure *:  A,B  (1x)
Keywords :  Deoxyribonucleic Acid, Cisplatin, Dna, Duplex, 9-Mer, Intrastrand Cross-Link, Model J (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. G. Marzilli, J. S. Saad, Z. Kuklenyik, K. A. Keating, Y. Xu
Relationship Of Solution And Protein-Bound Structures Of Dn Duplexes With The Major Intrastrand Cross-Link Lesions Formed On Cisplatin Binding To Dna.
J. Am. Chem. Soc. V. 123 2764 2001
PubMed-ID: 11456962  |  Reference-DOI: 10.1021/JA0007915

(-) Compounds

Molecule 1 - 5'-D(*CP*TP*CP*CP*GP*GP*CP*CP*T)-3'
    ChainsA
    EngineeredYES
    Other DetailsCISPLATIN INTRASTRAND CROSS-LINK DNA
    SyntheticYES
 
Molecule 2 - 5'-D(*AP*GP*GP*CP*CP*GP*GP*AP*G)-3'
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
NMR Structure AB
NMR Structure * (1x)AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1CPT1Ligand/IonCISPLATIN
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1CPT1Ligand/IonCISPLATIN

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREDG A:5 , DG A:6BINDING SITE FOR RESIDUE CPT A 10

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1KSB)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1KSB)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1KSB)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:DNA  Length:9
                                       
                   1ksb A 1 CTCCGGCCT 9

Chain B from PDB  Type:DNA  Length:9
                                       
                   1ksb B 1 AGGCCGGAG 9

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1KSB)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

1a84 NMR SOLUTION STRUCTURE OF A DNA DODECAMER DUPLEX CONTAINING A CIS-DIAMMINEPLATINUM(II) D(GPG) INTRASTRAND CROSS-LINK, THE MAJOR ADDUCT OF THE ANTICANCER DRUG CISPLATIN
1ckt CRYSTAL STRUCTURE OF HMG1 DOMAIN A BOUND TO A CISPLATIN- MODIFIED DNA DUPLEX