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(-) Description

Title :  SOLUTION STRUCTURE OF AN IN VITRO SELECTED RNA WHICH IS SEQUENCE SPECIFICALLY RECOGNIZED BY RBD12 OF HAMSTER NUCLEOLIN.SNRE (ANTI)
 
Authors :  P. Bouvet, F. H. -T. Allain, L. D. Finger, T. Dieckmann, J. Feigon
Date :  05 Apr 01  (Deposition) - 20 Jun 01  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (21x)
Keywords :  Eucaryotic Loop E Motif A Form Rna Flexible Loops (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Bouvet, F. H. Allain, L. D. Finger, T. Dieckmann, J. Feigon
Recognition Of Pre-Formed And Flexible Elements Of An Rna Stem-Loop By Nucleolin.
J. Mol. Biol. V. 309 763 2001
PubMed-ID: 11397095  |  Reference-DOI: 10.1006/JMBI.2001.4691
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'- R(*GP*GP*CP*CP*GP*AP*AP*AP*UP*CP*CP*CP*GP*AP*AP*GP*UP*AP*GP *GP*CP*C)-3'
    ChainsA
    EngineeredYES
    Other DetailsIN VITRO SELECTED RNA APTAMER WHICH IS BOUND BY RBD12 OF HAMSTER NUCLEOLIN.
    Other Details - SourceIN VITRO SELECTION USING MILLIGAN TEMPLATES.
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (21x)

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:RNA  Length:22
                                                     
                  1ie2 A  1 GGCCGAAAUCCCGAAGUAGGCC 22
                                    10        20  

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NMR Structure(hide GO term definitions)
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(-) Related Entries Specified in the PDB File

1fj7 SOLUTION STRUCTURE OF RBD1 ALONE.
1fjc SOLUTION STRUCTURE OF RBD2 ALONE.
1fje SOLUTION STRUCTURE OF THE HAMSTER NUCLEOLIN RBD12 IN COMPLEX WITH SNRE.
1ie1 FIRST ENSEMBLE SNRE STRUCTURES WITH THE LOOP G CONSTRAINED TO SYN.