Chain A from PDB Type:PROTEIN Length:283
aligned with P35_NPVAC | P08160 from UniProtKB/Swiss-Prot Length:299
Alignment length:287
21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291
P35_NPVAC 12 SQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTI 298
SCOP domains d1i3sa_ A: Baculovirus p35 protein SCOP domains
CATH domains 1i3sA00 A:12-298 Baculovirus P35 CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ..eeeeeeeee..eeeeeee.hhhhh.....eeeeeee...eeeeee..hhhhhhhhhhhhhhhhh..........----..eeee...eeeeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh......eeeeeee...........eeeee.....eeee...........eeeeeeeeee....hhhhhhhhhhhh..........eeeeeeee...eeeeeeeeeeee.........eeeeeeeeeeeee....eeeeeeeeeee.....eeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1i3s A 12 SQTIIRDCQVDKQTRELVYINKIMNTMLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKPDEQFDQLERDYSDQMD----SIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTI 298
21 31 41 51 61 71 81 | -| 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291
87 92
Chain B from PDB Type:PROTEIN Length:281
aligned with P35_NPVAC | P08160 from UniProtKB/Swiss-Prot Length:299
Alignment length:288
21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291
P35_NPVAC 12 SQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTIK 299
SCOP domains d1i3sb_ B: Baculovirus p35 protein SCOP domains
CATH domains 1i3sB00 B:12-299 Baculovirus P35 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeeeee.....eeeeeehhhhhh.....eeeeeee...eeeeee..hhhhhhhhhhhhhhhhh.......-------..eeee...eeeeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh......eeeeeee...........eeeee.....eeee...........eeeeeeeeee....hhhhhhhhhhh...........eeeeeeee...eeeeeeeeeeee.........eeeeeeeeeeeee....eeeeeeeeeee.....eeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1i3s B 12 SQTIIRDCQVDKQTRELVYINKIMNTMLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKPDEQFDQLERDYSD-------SIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTIK 299
21 31 41 51 61 71 81 | -| 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291
84 92
Chain C from PDB Type:PROTEIN Length:282
aligned with P35_NPVAC | P08160 from UniProtKB/Swiss-Prot Length:299
Alignment length:288
21 31 41 51 61 71 81 91 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291
P35_NPVAC 12 SQTIIRDCQVDKQTRELVYINKIMNTQLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLERDYSDQMDGFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTIK 299
SCOP domains d1i3sc_ C: Baculovirus p35 protein SCOP domains
CATH domains 1i3sC00 C:12-299 Baculovirus P35 CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ..eeeeeee.....eeeeee.hhhhh.....eeeeeee...eeeeee..hhhhhhhhhhhhhhhhh........------..eeee...eeeeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......eeeeeee...........eeeee.....eeee...........eeeeeeeeee....hhhhhhhhhhh...........eeeeeeee...eeeeeeeeeeeee.......eeeeeeeeeeeeee....eeeeeeeeeee.....eeee... Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1i3s C 12 SQTIIRDCQVDKQTRELVYINKIMNTMLTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKPDEQFDQLERDYSDQ------SIKYFKDEHYSVSCQNGSVLKSKFAKILKSHDYTDKKSIEAYEKYCLPKLVDERNDYYVAVCVLKPGFENGSNQVLSFEYNPIGNKVIVPFAHEINDTGLYEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWKIFCNGFIYDKKSKVLYVKLHNVTSALNKNVILNTIK 299
21 31 41 51 61 71 81 | -| 101 111 121 131 141 151 161 171 181 191 201 211 221 231 241 251 261 271 281 291
85 92
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |