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(-) Description

Title :  THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA
 
Authors :  J. M. Diprose, J. M. Grimes, G. C. Sutton, J. N. Burroughs, A. Meyer, S. Maan, P. P. C. Mertens, D. I. Stuart
Date :  17 Jul 02  (Deposition) - 26 Sep 02  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  10.00
Chains :  Asym. Unit :  I,J,K,L,M,N
Biol. Unit 1:  I,L  (1x)
Biol. Unit 2:  J,M  (1x)
Biol. Unit 3:  K,N  (1x)
Keywords :  Virus/Viral Protein/Rna, Virus, Viral Protein, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. M. Diprose, J. M. Grimes, G. C. Sutton, J. N. Burroughs, A. Meyer, S. Maan, P. P. C. Mertens, D. I. Stuart
The Core Of Bluetongue Virus Binds Double-Stranded Rna
J. Virol. V. 76 9533 2002
PubMed-ID: 12186935  |  Reference-DOI: 10.1128/JVI.76.18.9533-9536.2002
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RNA
    Chains: I,
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 40051
    Strain: STEROTYPE 1 (SOUTH AFRICA)
 
Molecule 2 - RNA
    Chains: J
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 40051
    Strain: STEROTYPE 1 (SOUTH AFRICA)
 
Molecule 3 - RNA
    Chains: K
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 40051
    Strain: STEROTYPE 1 (SOUTH AFRICA)
 
Molecule 4 - RNA
    Chains: L
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 40051
    Strain: STEROTYPE 1 (SOUTH AFRICA)
 
Molecule 5 - RNA
    Chains: M
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 40051
    Strain: STEROTYPE 1 (SOUTH AFRICA)
 
Molecule 6 - RNA
    Chains: N
    Organism Scientific: BLUETONGUE VIRUS
    Organism Taxid: 40051
    Strain: STEROTYPE 1 (SOUTH AFRICA)

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : IJKLMN
Biological Unit 1 (1x): I  L  
Biological Unit 2 (1x):  J  M 
Biological Unit 3 (1x):   K  N

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1H1K)

(-) Sites  (0, 0)

(no "Site" information available for 1H1K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1H1K)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1H1K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1H1K)

(-) Exons   (0, 0)

(no "Exon" information available for 1H1K)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain I from PDB  Type:RNA  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                 1h1k I   1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 412
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410  


Chain J from PDB  Type:RNA  Length:276
                                                                                                                                                                                                                                                                                                                    
                 1h1k J   1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 276
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270      


Chain K from PDB  Type:RNA  Length:265
                                                                                                                                                                                                                                                                                                         
                 1h1k K   1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 265
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     


Chain L from PDB  Type:RNA  Length:412
                                                                                                                                                                                                                                                                                                                                                                                                                                                            
                 1h1k L 413 UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU 824
                                   422       432       442       452       462       472       482       492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       782       792       802       812       822  


Chain M from PDB  Type:RNA  Length:276
                                                                                                                                                                                                                                                                                                                    
                 1h1k M 277 UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU 552
                                   286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546      


Chain N from PDB  Type:RNA  Length:265
                                                                                                                                                                                                                                                                                                         
                 1h1k N 266 UUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUUU 530
                                   275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1H1K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1H1K)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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(-) Related Entries Specified in the PDB File

2btv ATOMIC MODEL FOR BLUETONGUE VIRUS (BTV) CORE