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(-) Description

Title :  DNA WITH PYRENE PAIRED AT ABASIC SITES
 
Authors :  S. Smirnov, T. J. Matray, E. T. Kool, C. De Los Santos
Date :  03 Oct 00  (Deposition) - 18 Oct 00  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (6x)
Keywords :  Pyrene, Tetrahydrofuran, Non-Hydrogen Bonded Dna Base Pair (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Smirnov, T. J. Matray, E. T. Kool, C. De Los Santos
Integrity Of Duplex Structures Without Hydrogen Bonding: Dna With Pyrene Paired At Abasic Sites
Nucleic Acids Res. V. 30 5561 2002
PubMed-ID: 12490724  |  Reference-DOI: 10.1093/NAR/GKF688
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 5'-D(*CP*AP*CP*AP*AP*AP*CP*AP*(PYP)P*GP*CP*AP*C)- 3'
    ChainsA
    EngineeredYES
    SyntheticYES
 
Molecule 2 - 5'-D(*GP*TP*GP*CP*(3DR)P*TP*GP*TP*TP*TP*GP*TP*G)- 3'
    ChainsB
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  
NMR Structure (6x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

NMR Structure (2, 2)
No.NameCountTypeFull Name
13DR1Mod. Nucleotide1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
2PYP1Mod. Nucleotide2'-DEOXYRIBOFURANOSYLPYRENE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 1FZL)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1FZL)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1FZL)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1FZL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1FZL)

(-) Exons   (0, 0)

(no "Exon" information available for 1FZL)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:13
                                            
                  1fzl A  1 CACAAACAxGCAC 13
                                    10   
                                    9-PYP

Chain B from PDB  Type:DNA  Length:13
                                            
                  1fzl B 14 GTGCxTGTTTGTG 26
                                |   23   
                               18-3DR    

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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1FZL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1FZL)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

NMR Structure(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1fzs 1FZS CONTAINS A REPLICATION INTERMEDIATE WITH A 3'-TERMINAL PYRENE RESIDUE PAIRED AT AN ABASIC SITE