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(-) Description

Title :  HUMAN SULT1A3 WITH SULFATE BOUND
 
Authors :  L. M. Bidwell, M. E. Mcmanus, A. Gaedigk, Y. Kakuta, M. Negishi, L. Pedersen, J. L. Martin
Date :  18 Apr 99  (Deposition) - 10 Nov 99  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A
Keywords :  Sult1A3, Hast3, Sulfotransferase, Pap, Paps, Dopamine (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. M. Bidwell, M. E. Mcmanus, A. Gaedigk, Y. Kakuta, M. Negishi, L. Pedersen, J. L. Martin
Crystal Structure Of Human Catecholamine Sulfotransferase.
J. Mol. Biol. V. 293 521 1999
PubMed-ID: 10543947  |  Reference-DOI: 10.1006/JMBI.1999.3153
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN (ARYL SULFOTRANSFERASE)
    Cellular LocationCYTOPLASM
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Cellular LocationCYTOPLASM
    Expression System Cell LineBL21(DE3)
    Expression System PlasmidPET20B
    Expression System Taxid562
    Expression System Vector TypePLASMID
    OrganBRAIN (LIBRARY LAMBDA GT10)
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSULT1A3, HAST3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:45 , LYS A:48 , SER A:49 , GLY A:50 , THR A:51 , THR A:52 , HIS A:108BINDING SITE FOR RESIDUE SO4 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1CJM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Pro A:101 -Pro A:102

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (6, 6)

Asymmetric/Biological Unit (6, 6)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_071108P101HST1A3_HUMANUnclassified  ---AP101H
2UniProtVAR_071112P101HST1A4_HUMANUnclassified  ---AP101H
3UniProtVAR_071109P101LST1A3_HUMANPolymorphism751527244AP101L
4UniProtVAR_071113P101LST1A4_HUMANPolymorphism751527244AP101L
5UniProtVAR_071110R144CST1A3_HUMANUnclassified  ---AR144C
6UniProtVAR_071114R144CST1A4_HUMANUnclassified  ---AR144C

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1CJM)

(-) Exons   (7, 7)

Asymmetric/Biological Unit (7, 7)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.4ENST000003604234ENSE00001597207chr16:29471194-29471306113ST1A4_HUMAN-00--
1.5aENST000003604235aENSE00001772105chr16:29472703-29472854152ST1A4_HUMAN1-50501A:8-5043
1.6ENST000003604236ENSE00001737035chr16:29472959-29473084126ST1A4_HUMAN50-92431A:50-90 (gaps)41
1.7bENST000003604237bENSE00001684122chr16:29473174-2947327198ST1A4_HUMAN92-124331A:94-12431
1.8bENST000003604238bENSE00001720833chr16:29474666-29474792127ST1A4_HUMAN125-167431A:125-16743
1.9ENST000003604239ENSE00001639524chr16:29474888-2947498295ST1A4_HUMAN167-198321A:167-19832
1.10bENST0000036042310bENSE00001625078chr16:29475481-29475661181ST1A4_HUMAN199-259611A:199-21517
1.11aENST0000036042311aENSE00001378286chr16:29475784-29476282499ST1A4_HUMAN259-295371A:262-29332

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:223
 aligned with ST1A3_HUMAN | P0DMM9 from UniProtKB/Swiss-Prot  Length:295

    Alignment length:286
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287      
          ST1A3_HUMAN     8 SRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLLINTYPKSGTTWVSQILDMIYQGGDLEKCNRAPIYVRVPFLEVNDPGEPSGLETLKDTPPPRLIKSHLPLALLPQTLLDQKVKVVYVARNPKDVAVSYYHFHRMEKAHPEPGTWDSFLEKFMAGEVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKKNPMTNYTTVPQELMDHSISPFMRKGMAGDWKTTFTVAQNERFDADYAEKMAGCSLSFRS 293
               SCOP domains d1cjma_ A: Aryl sulfotransferase sult1a3                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1cjmA00 A:8-293 P-loop containing nucleotide triphosphat              e hydrolases                                                                                                                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeeehhhhhh..hhhh.......eeeee.....hhhhhhhhhhhh.--------------.............---..........eeee...hhh..hhhhh...eeeeee..hhhhhhhhhhhhhh.........hhhhhhhhh........hhhhhhhhhhhhh...eeeeehhhhhh.hhhhhhhhhhhh....----------------------------------------------..hhh...hhhhhhhhhhhhhh.......... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------------------------------H------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------H------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
             SAPs(SNPs) (4) ---------------------------------------------------------------------------------------------L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (4)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1cjm A   8 SRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLLINTYPKSGTTWVSQILDMIYQ--------------RVPFLEVNDPGEP---ETLKDTPPPRLIKSHLPLALLPQTLLDQKVKVVYVARNPKDVAVSYYHFHRMEKAHPEPGTWDSFLEKFMAGEVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSL----------------------------------------------GDWKTTFTVAQNERFDADYAEKMAGCSLSFRS 293
                                    17        27        37        47        57     |   -         -|       87  |   | 97       107       117       127       137       147       157       167       177       187       197       207       | -         -         -         -         -    |  267       277       287      
                                                                                  63             78          90  94                                                                                                                      215                                            262                               

Chain A from PDB  Type:PROTEIN  Length:223
 aligned with ST1A4_HUMAN | P0DMN0 from UniProtKB/Swiss-Prot  Length:295

    Alignment length:286
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287      
          ST1A4_HUMAN     8 SRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLLINTYPKSGTTWVSQILDMIYQGGDLEKCNRAPIYVRVPFLEVNDPGEPSGLETLKDTPPPRLIKSHLPLALLPQTLLDQKVKVVYVARNPKDVAVSYYHFHRMEKAHPEPGTWDSFLEKFMAGEVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSLPEETMDFMVQHTSFKEMKKNPMTNYTTVPQELMDHSISPFMRKGMAGDWKTTFTVAQNERFDADYAEKMAGCSLSFRS 293
               SCOP domains d1cjma_ A: Aryl sulfotransferase sult1a3                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 1cjmA00 A:8-293 P-loop containing nucleotide triphosphat              e hydrolases                                                                                                                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeeehhhhhh..hhhh.......eeeee.....hhhhhhhhhhhh.--------------.............---..........eeee...hhh..hhhhh...eeeeee..hhhhhhhhhhhhhh.........hhhhhhhhh........hhhhhhhhhhhhh...eeeeehhhhhh.hhhhhhhhhhhh....----------------------------------------------..hhh...hhhhhhhhhhhhhh.......... Sec.struct. author
             SAPs(SNPs) (1) ---------------------------------------------------------------------------------------------H------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ---------------------------------------------------------------------------------------------H------------------------------------------C----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs) (2)
             SAPs(SNPs) (3) ---------------------------------------------------------------------------------------------L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (3)
             SAPs(SNPs) (4) ---------------------------------------------------------------------------------------------L------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (4)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.5a  PDB: A:8-50 UniProt: 1-50       -----------------------------------------Exon 1.7b  PDB: A:94-124         Exon 1.8b  PDB: A:125-167 UniProt: 125-167 -------------------------------Exon 1.10b  PDB: A:199-215 UniProt: 199-259 [INCOMPLETE]     ---------------------------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.6  PDB: A:50-90 (gaps) [INCOMPLETE] --------------------------------------------------------------------------Exon 1.9  PDB: A:167-198        ------------------------------------------------------------Exon 1.11a  PDB: A:262-293          Transcript 1 (2)
                 1cjm A   8 SRPPLEYVKGVPLIKYFAEALGPLQSFQARPDDLLINTYPKSGTTWVSQILDMIYQ--------------RVPFLEVNDPGEP---ETLKDTPPPRLIKSHLPLALLPQTLLDQKVKVVYVARNPKDVAVSYYHFHRMEKAHPEPGTWDSFLEKFMAGEVSYGSWYQHVQEWWELSRTHPVLYLFYEDMKENPKREIQKILEFVGRSL----------------------------------------------GDWKTTFTVAQNERFDADYAEKMAGCSLSFRS 293
                                    17        27        37        47        57     |   -         -|       87  |   | 97       107       117       127       137       147       157       167       177       187       197       207       | -         -         -         -         -    |  267       277       287      
                                                                                  63             78          90  94                                                                                                                      215                                            262                               

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1CJM)

(-) Gene Ontology  (14, 21)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (ST1A3_HUMAN | P0DMM9)
molecular function
    GO:0004062    aryl sulfotransferase activity    Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008146    sulfotransferase activity    Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0050427    3'-phosphoadenosine 5'-phosphosulfate metabolic process    The chemical reactions and pathways involving 3'-phosphoadenosine 5'-phosphosulfate, a naturally occurring mixed anhydride. It is an intermediate in the formation of a variety of sulfo compounds in biological systems.
    GO:0036498    IRE1-mediated unfolded protein response    A series of molecular signals mediated by the endoplasmic reticulum stress sensor IRE1 (Inositol-requiring transmembrane kinase/endonuclease). Begins with activation of IRE1 in response to endoplasmic reticulum (ER) stress, and ends with regulation of a downstream cellular process, e.g. transcription. One target of activated IRE1 is the transcription factor HAC1 in yeast, or XBP1 in mammals; IRE1 cleaves an intron of a mRNA coding for HAC1/XBP1 to generate an activated HAC1/XBP1 transcription factor, which controls the up regulation of UPR-related genes. At least in mammals, IRE1 can also signal through additional intracellular pathways including JNK and NF-kappaB.
    GO:0006584    catecholamine metabolic process    The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
    GO:0009812    flavonoid metabolic process    The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
    GO:0051923    sulfation    The addition of a sulfate group to a molecule.
    GO:0006805    xenobiotic metabolic process    The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain A   (ST1A4_HUMAN | P0DMN0)
molecular function
    GO:0004062    aryl sulfotransferase activity    Catalysis of the reaction: 3'-phosphoadenosine 5'-phosphosulfate + a phenol = adenosine 3',5'-bisphosphate + an aryl sulfate.
    GO:0008146    sulfotransferase activity    Catalysis of the transfer of a sulfate group from 3'-phosphoadenosine 5'-phosphosulfate to the hydroxyl group of an acceptor, producing the sulfated derivative and 3'-phosphoadenosine 5'-phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006584    catecholamine metabolic process    The chemical reactions and pathways involving any of a group of physiologically important biogenic amines that possess a catechol (3,4-dihydroxyphenyl) nucleus and are derivatives of 3,4-dihydroxyphenylethylamine.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0008202    steroid metabolic process    The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        ST1A3_HUMAN | P0DMM92a3r
        ST1A4_HUMAN | P0DMN02a3r

(-) Related Entries Specified in the PDB File

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