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(-) Description

Title :  CRYSTAL STRUCTURE OF A DNA DUPLEX CONTAINING 8-HYDROXYDEOXYGUANINE.ADENINE BASE-PAIRS
 
Authors :  K. E. Mcauley-Hecht, G. A. Leonard, N. J. Gibson, J. B. Thomson, W. P. Watson, W. N. Hunter, T. Brown
Date :  19 May 94  (Deposition) - 04 Oct 94  (Release) - 26 May 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  B-Dna, Double Helix, Modified, Mismatched (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. E. Mcauley-Hecht, G. A. Leonard, N. J. Gibson, J. B. Thomson, W. P. Watson, W. N. Hunter, T. Brown
Crystal Structure Of A Dna Duplex Containing 8-Hydroxydeoxyguanine-Adenine Base Pairs.
Biochemistry V. 33 10266 1994
PubMed-ID: 8068665  |  Reference-DOI: 10.1021/BI00200A006
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*(8OG) P*GP*CP*G)-3')
    ChainsA, B
    EngineeredYES
    SyntheticYES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
18OG2Mod. Nucleotide8-OXO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE

(-) Sites  (0, 0)

(no "Site" information available for 178D)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 178D)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 178D)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 178D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 178D)

(-) Exons   (0, 0)

(no "Exon" information available for 178D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:DNA  Length:12
                                           
                  178d A  1 CGCAAATTgGCG 12
                                    10  
                                    9-8OG

Chain B from PDB  Type:DNA  Length:12
                                           
                  178d B 13 CGCAAATTgGCG 24
                                    22  
                                   21-8OG

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 178D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 178D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 178D)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 178D)

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