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9PAP
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (41 KB)
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(1)
Title
:
STRUCTURE OF PAPAIN REFINED AT 1.65 ANGSTROMS RESOLUTION
Authors
:
I. G. Kamphuis, J. Drenth
Date
:
31 Mar 86 (Deposition) - 24 Oct 86 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Hydrolase (Sulfhydryl Proteinase)
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. G. Kamphuis, K. H. Kalk, M. B. Swarte, J. Drenth
Structure Of Papain Refined At 1. 65 A Resolution
J. Mol. Biol. V. 179 233 1984
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 30)
Info
All Hetero Components
1a: METHANOL (MOHa)
1aa: METHANOL (MOHaa)
1ab: METHANOL (MOHab)
1ac: METHANOL (MOHac)
1b: METHANOL (MOHb)
1c: METHANOL (MOHc)
1d: METHANOL (MOHd)
1e: METHANOL (MOHe)
1f: METHANOL (MOHf)
1g: METHANOL (MOHg)
1h: METHANOL (MOHh)
1i: METHANOL (MOHi)
1j: METHANOL (MOHj)
1k: METHANOL (MOHk)
1l: METHANOL (MOHl)
1m: METHANOL (MOHm)
1n: METHANOL (MOHn)
1o: METHANOL (MOHo)
1p: METHANOL (MOHp)
1q: METHANOL (MOHq)
1r: METHANOL (MOHr)
1s: METHANOL (MOHs)
1t: METHANOL (MOHt)
1u: METHANOL (MOHu)
1v: METHANOL (MOHv)
1w: METHANOL (MOHw)
1x: METHANOL (MOHx)
1y: METHANOL (MOHy)
1z: METHANOL (MOHz)
2a: CYSTEINESULFONIC ACID (OCSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MOH
29
Ligand/Ion
METHANOL
2
OCS
1
Mod. Amino Acid
CYSTEINESULFONIC ACID
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: ACT (UNKNOWN)
11: BC1 (SOFTWARE)
12: BC2 (SOFTWARE)
13: BC3 (SOFTWARE)
14: BC4 (SOFTWARE)
15: BC5 (SOFTWARE)
16: BC6 (SOFTWARE)
17: BC7 (SOFTWARE)
18: BC8 (SOFTWARE)
19: BC9 (SOFTWARE)
20: CC1 (SOFTWARE)
21: CC2 (SOFTWARE)
22: CC3 (SOFTWARE)
23: CC4 (SOFTWARE)
24: CC5 (SOFTWARE)
25: CC6 (SOFTWARE)
26: CC7 (SOFTWARE)
27: CC8 (SOFTWARE)
28: CC9 (SOFTWARE)
29: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:78 , LYS A:106 , HOH A:341 , HOH A:432
BINDING SITE FOR RESIDUE MOH A 214
02
AC2
SOFTWARE
LEU A:143 , ARG A:145 , GLY A:146
BINDING SITE FOR RESIDUE MOH A 215
03
AC3
SOFTWARE
ILE A:40 , ARG A:41
BINDING SITE FOR RESIDUE MOH A 216
04
AC4
SOFTWARE
ALA A:126 , ASN A:127
BINDING SITE FOR RESIDUE MOH A 217
05
AC5
SOFTWARE
SER A:97 , GLY A:101 , TYR A:103
BINDING SITE FOR RESIDUE MOH A 218
06
AC6
SOFTWARE
CYS A:153 , GLY A:154 , CYS A:200 , HOH A:299 , HOH A:413
BINDING SITE FOR RESIDUE MOH A 219
07
AC7
SOFTWARE
SER A:124 , ASN A:127 , GLN A:128
BINDING SITE FOR RESIDUE MOH A 220
08
AC8
SOFTWARE
OCS A:25 , GLY A:65 , GLY A:66
BINDING SITE FOR RESIDUE MOH A 221
09
AC9
SOFTWARE
HOH A:383
BINDING SITE FOR RESIDUE MOH A 222
10
ACT
UNKNOWN
HIS A:159 , ASN A:175
NULL
11
BC1
SOFTWARE
ARG A:145 , GLY A:194
BINDING SITE FOR RESIDUE MOH A 223
12
BC2
SOFTWARE
ARG A:111 , GLN A:112 , HOH A:336
BINDING SITE FOR RESIDUE MOH A 224
13
BC3
SOFTWARE
PRO A:68 , HOH A:282
BINDING SITE FOR RESIDUE MOH A 225
14
BC4
SOFTWARE
HOH A:363
BINDING SITE FOR RESIDUE MOH A 227
15
BC5
SOFTWARE
ASP A:140 , GLY A:151 , PRO A:152 , HOH A:390
BINDING SITE FOR RESIDUE MOH A 228
16
BC6
SOFTWARE
PRO A:15 , HOH A:379
BINDING SITE FOR RESIDUE MOH A 229
17
BC7
SOFTWARE
GLY A:20 , SER A:21 , HOH A:414
BINDING SITE FOR RESIDUE MOH A 230
18
BC8
SOFTWARE
TYR A:78
BINDING SITE FOR RESIDUE MOH A 231
19
BC9
SOFTWARE
ASN A:18 , GLY A:20
BINDING SITE FOR RESIDUE MOH A 232
20
CC1
SOFTWARE
ARG A:188 , MOH A:235 , HOH A:404
BINDING SITE FOR RESIDUE MOH A 233
21
CC2
SOFTWARE
ASN A:64
BINDING SITE FOR RESIDUE MOH A 234
22
CC3
SOFTWARE
GLY A:147 , GLU A:183 , ARG A:188 , MOH A:233
BINDING SITE FOR RESIDUE MOH A 235
23
CC4
SOFTWARE
TYR A:208
BINDING SITE FOR RESIDUE MOH A 236
24
CC5
SOFTWARE
THR A:42 , ASN A:44 , ASN A:46 , TYR A:82 , HOH A:287 , HOH A:328
BINDING SITE FOR RESIDUE MOH A 237
25
CC6
SOFTWARE
TYR A:82 , HOH A:416
BINDING SITE FOR RESIDUE MOH A 238
26
CC7
SOFTWARE
ILE A:37 , ARG A:41 , ASN A:127 , GLN A:128 , HOH A:388
BINDING SITE FOR RESIDUE MOH A 239
27
CC8
SOFTWARE
TYR A:116 , SER A:196
BINDING SITE FOR RESIDUE MOH A 240
28
CC9
SOFTWARE
GLN A:142 , HOH A:381
BINDING SITE FOR RESIDUE MOH A 241
29
DC1
SOFTWARE
ARG A:59 , TYR A:61 , TYR A:67
BINDING SITE FOR RESIDUE MOH A 242
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d9papa_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
Papain
(22)
Papaya (Carica papaya) [TaxId: 3649]
(22)
1a
d9papa_
A:
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_9papA00 (A:1-212)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Papaya (Carica papaya)
(23)
1a
9papA00
A:1-212
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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Miscellaneous
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Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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Asym.Unit (46 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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