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9ICP
Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7) COMPLEXED WITH SIX BASE PAIRS OF DNA; SOAKED IN THE PRESENCE OF PYROPHOSPHATE (1 MILLIMOLAR) AND MGCL2 (5 MILLIMOLAR)
Authors
:
H. Pelletier, M. R. Sawaya
Date
:
16 Dec 95 (Deposition) - 15 Nov 96 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,P,T
Biol. Unit 1: A,P,T (1x)
Keywords
:
Dna-Directed Dna Polymerase, Dna Replication, Dna Repair, Nucleotidyltransferase, Complex (Nucleotidyltransferase/Dna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
H. Pelletier, M. R. Sawaya, W. Wolfle, S. H. Wilson, J. Kraut
A Structural Basis For Metal Ion Mutagenicity And Nucleotide Selectivity In Human Dna Polymerase Beta
Biochemistry V. 35 12762 1996
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: SODIUM ION (NAa)
1b: SODIUM ION (NAb)
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Label:
No.
Name
Count
Type
Full Name
1
NA
2
Ligand/Ion
SODIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:101 , VAL A:103 , ILE A:106 , HOH A:601 , DG P:6
BINDING SITE FOR RESIDUE NA A 341
2
AC2
SOFTWARE
LYS A:60 , LEU A:62 , PRO A:63 , VAL A:65
BINDING SITE FOR RESIDUE NA A 342
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d9icpa1 (A:9-91)
2a: SCOP_d9icpa3 (A:92-148)
3a: SCOP_d9icpa4 (A:149-335)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
DNA polymerase beta, N-terminal domain-like
(205)
Family
:
DNA polymerase beta, N-terminal domain-like
(183)
Protein domain
:
DNA polymerase beta, N-terminal (8 kD)-domain
(156)
Human (Homo sapiens) [TaxId: 9606]
(141)
1a
d9icpa1
A:9-91
Superfamily
:
PsbU/PolX domain-like
(218)
Family
:
DNA polymerase beta-like, second domain
(190)
Protein domain
:
DNA polymerase beta
(164)
Human (Homo sapiens) [TaxId: 9606]
(141)
2a
d9icpa3
A:92-148
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
DNA polymerase beta-like
(218)
Protein domain
:
DNA polymerase beta, catalytic (31 kD) fragment
(164)
Human (Homo sapiens) [TaxId: 9606]
(141)
3a
d9icpa4
A:149-335
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CATH Domains
(4, 4)
Info
all CATH domains
1a: CATH_9icpA03 (A:149-271)
2a: CATH_9icpA04 (A:272-334)
3a: CATH_9icpA01 (A:9-91)
4a: CATH_9icpA02 (A:92-148)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta Polymerase; domain 2
(187)
Homologous Superfamily
:
Beta Polymerase, domain 2
(183)
[unclassified]
(117)
1a
9icpA03
A:149-271
Topology
:
Beta Polymerase; domain 3
(161)
Homologous Superfamily
:
Beta Polymerase, domain 3
(161)
[unclassified]
(116)
2a
9icpA04
A:272-334
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
[code=1.10.150.110, no name defined]
(150)
[unclassified]
(116)
3a
9icpA01
A:9-91
Homologous Superfamily
:
5' to 3' exonuclease, C-terminal subdomain
(384)
[unclassified]
(230)
4a
9icpA02
A:92-148
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Pfam Domains
(0, 0)
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Asym.Unit (71 KB)
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