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6CGT
Asym. Unit
Info
Asym.Unit (117 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
HOXA COMPLEX OF CYCLODEXTRIN GLYCOSYLTRANSFERASE MUTANT
Authors
:
G. Parsiegla, G. E. Schulz
Date
:
06 Jun 98 (Deposition) - 14 Oct 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Glycosyltransferase, Starch Degradation, Cyclodextrin
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Parsiegla, A. K. Schmidt, G. E. Schulz
Substrate Binding To A Cyclodextrin Glycosyltransferase And Mutations Increasing The Gamma-Cyclodextrin Production.
Eur. J. Biochem. V. 255 710 1998
(for further references see the
PDB file header
)
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: 4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPY... (DAGa)
2b: 4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPY... (DAGb)
3a: ALPHA-D-GLUCOSE (GLCa)
3b: ALPHA-D-GLUCOSE (GLCb)
4a: OXIRANPSEUDOGLUCOSE (OPGa)
4b: OXIRANPSEUDOGLUCOSE (OPGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
DAG
2
Ligand/Ion
4,6-DIDEOXY-4-AMINO-BETA-D-GLUCOPYRANOSIDE
3
GLC
2
Ligand/Ion
ALPHA-D-GLUCOSE
4
OPG
2
Ligand/Ion
OXIRANPSEUDOGLUCOSE
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:195 , LYS A:232 , PHE A:259 , DAG A:702
BINDING SITE FOR RESIDUE GLC A 701
2
AC2
SOFTWARE
TYR A:195 , ALA A:230 , HIS A:233 , GLU A:257 , ASP A:328 , GLC A:701 , OPG A:703 , HOH A:878
BINDING SITE FOR RESIDUE DAG A 702
3
AC3
SOFTWARE
TYR A:100 , HIS A:140 , ASP A:229 , GLU A:257 , HIS A:327 , ASP A:328 , DAG A:702 , GLC A:704
BINDING SITE FOR RESIDUE OPG A 703
4
AC4
SOFTWARE
HIS A:98 , TYR A:100 , TRP A:101 , TYR A:195 , ASP A:371 , ARG A:375 , OPG A:703 , DAG A:705
BINDING SITE FOR RESIDUE GLC A 704
5
AC5
SOFTWARE
TYR A:89 , ASP A:371 , GLC A:704 , OPG A:706
BINDING SITE FOR RESIDUE DAG A 705
6
AC6
SOFTWARE
ASP A:196 , DAG A:705 , HOH A:890
BINDING SITE FOR RESIDUE OPG A 706
7
AC7
SOFTWARE
ASN A:139 , ILE A:190 , ASP A:199 , HIS A:233
BINDING SITE FOR RESIDUE CA A 685
8
AC8
SOFTWARE
ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53
BINDING SITE FOR RESIDUE CA A 686
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(4, 4)
Info
All SCOP Domains
1a: SCOP_d6cgta3 (A:407-494)
2a: SCOP_d6cgta1 (A:495-579)
3a: SCOP_d6cgta2 (A:580-684)
4a: SCOP_d6cgta4 (A:1-406)
View:
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Classes
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)
(
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Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
1a
d6cgta3
A:407-494
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
E-set domains of sugar-utilizing enzymes
(147)
Protein domain
:
Cyclomaltodextrin glycanotransferase, domain D
(49)
Bacillus circulans, different strains [TaxId: 1397]
(36)
2a
d6cgta1
A:495-579
Fold
:
Prealbumin-like
(433)
Superfamily
:
Starch-binding domain-like
(84)
Family
:
Starch-binding domain
(67)
Protein domain
:
Cyclodextrin glycosyltransferase, C-terminal domain
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
3a
d6cgta2
A:580-684
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Cyclodextrin glycosyltransferase
(51)
Bacillus circulans, different strains [TaxId: 1397]
(36)
4a
d6cgta4
A:1-406
[
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_6cgtA01 (A:1-400)
2a: CATH_6cgtA02 (A:401-494)
3a: CATH_6cgtA04 (A:581-684)
3b: CATH_6cgtA03 (A:495-580)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Glycosidases
(843)
Bacillus circulans. Organism_taxid: 1397. Strain: 8.
(7)
1a
6cgtA01
A:1-400
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Bacillus circulans. Organism_taxid: 1397. Strain: 8.
(7)
2a
6cgtA02
A:401-494
Homologous Superfamily
:
Immunoglobulins
(2282)
Bacillus circulans. Organism_taxid: 1397. Strain: 8.
(7)
3a
6cgtA04
A:581-684
3b
6cgtA03
A:495-580
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (117 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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