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5XA9
Asym. Unit
Info
Asym.Unit (365 KB)
Biol.Unit 1 (353 KB)
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(1)
Title
:
COMPLETE STRUCTURE FACTORS AND AN ATOMIC MODEL OF THE CALCIUM PUMP (SERCA1A) AND ASSOCIATED PHOSPHOLIPIDS IN THE E2-ALF-(TG) CRYSTALS OF C2 SYMMETRY
Authors
:
Y. Norimatsu, K. Hasegawa, N. Shimizu, C. Toyoshima
Date
:
11 Mar 17 (Deposition) - 14 Jun 17 (Release) - 14 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
P-Type Atpase, Hydrolase, Calcium Transport, Calcium Binding, Atp Binding, Endoplasmic Reticulum, Sarcoplasmic Reticulum, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Norimatsu, K. Hasegawa, N. Shimizu, C. Toyoshima
Protein-Phospholipid Interplay Revealed With Crystals Of A Calcium Pump.
Nature V. 545 193 2017
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Hetero Components
(5, 38)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: TETRAFLUOROALUMINATE ION (ALFa)
3a: MAGNESIUM ION (MGa)
4a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWa)
4aa: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaa)
4ab: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWab)
4ac: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWac)
4ad: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWad)
4ae: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWae)
4af: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaf)
4ag: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWag)
4ah: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWah)
4b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWb)
4c: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWc)
4d: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWd)
4e: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWe)
4f: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWf)
4g: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWg)
4h: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWh)
4i: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWi)
4j: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWj)
4k: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWk)
4l: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWl)
4m: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWm)
4n: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWn)
4o: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWo)
4p: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWp)
4q: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWq)
4r: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWr)
4s: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWs)
4t: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWt)
4u: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWu)
4v: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWv)
4w: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWw)
4x: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWx)
4y: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWy)
4z: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWz)
5a: OCTANOIC ACID [3S-[3ALPHA, 3ABETA,... (TG1a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
ALF
1
Ligand/Ion
TETRAFLUOROALUMINATE ION
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
PCW
34
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
5
TG1
1
Ligand/Ion
OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA,6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OXY]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER
[
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Sites
(35, 35)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:351 , THR A:353 , ASP A:703 , ALF A:1002 , HOH A:1129 , HOH A:1136
binding site for residue MG A 1001
02
AC2
SOFTWARE
THR A:181 , GLY A:182 , ASP A:351 , LYS A:352 , THR A:353 , THR A:625 , GLY A:626 , LYS A:684 , ASN A:706 , MG A:1001 , HOH A:1111 , HOH A:1136
binding site for residue ALF A 1002
03
AC3
SOFTWARE
LEU A:253 , GLU A:255 , PHE A:256 , GLN A:259 , LEU A:260 , VAL A:263 , ILE A:765 , VAL A:769 , VAL A:772 , LEU A:828 , ILE A:829 , PHE A:834
binding site for residue TG1 A 1003
04
AC4
SOFTWARE
GLN A:259 , LEU A:266
binding site for residue PCW A 1004
05
AC5
SOFTWARE
GLY A:831 , PHE A:835
binding site for residue PCW A 1005
06
AC6
SOFTWARE
LYS A:972 , ASN A:990 , PCW A:1010 , PCW A:1020
binding site for residue PCW A 1006
07
AC7
SOFTWARE
ARG A:325 , PHE A:809 , TRP A:932 , PCW A:1023
binding site for residue PCW A 1007
08
AC8
SOFTWARE
ARG A:110 , PCW A:1021 , PCW A:1031
binding site for residue PCW A 1008
09
AC9
SOFTWARE
MET A:969 , LYS A:972 , ILE A:973 , ASN A:990 , TYR A:991 , PCW A:1006
binding site for residue PCW A 1010
10
AD1
SOFTWARE
PCW A:1022 , PCW A:1035
binding site for residue PCW A 1011
11
AD2
SOFTWARE
PCW A:1019 , PCW A:1021
binding site for residue PCW A 1012
12
AD3
SOFTWARE
PHE A:88 , PCW A:1023
binding site for residue PCW A 1013
13
AD4
SOFTWARE
ASN A:275 , THR A:871 , PCW A:1037
binding site for residue PCW A 1014
14
AD5
SOFTWARE
PCW A:1020
binding site for residue PCW A 1015
15
AD6
SOFTWARE
TYR A:858 , ILE A:987 , TYR A:991 , LEU A:992
binding site for residue PCW A 1016
16
AD7
SOFTWARE
LEU A:75 , PHE A:78 , ILE A:289 , ILE A:293 , PCW A:1031
binding site for residue PCW A 1017
17
AD8
SOFTWARE
PCW A:1012
binding site for residue PCW A 1019
18
AD9
SOFTWARE
LEU A:968 , PCW A:1006 , PCW A:1015
binding site for residue PCW A 1020
19
AE1
SOFTWARE
PCW A:1008 , PCW A:1012 , PCW A:1031
binding site for residue PCW A 1021
20
AE2
SOFTWARE
ILE A:931 , PCW A:1011
binding site for residue PCW A 1022
21
AE3
SOFTWARE
ARG A:324 , PCW A:1007 , PCW A:1013 , PCW A:1036
binding site for residue PCW A 1023
22
AE4
SOFTWARE
ARG A:63
binding site for residue PCW A 1024
23
AE5
SOFTWARE
GLN A:259 , LYS A:262 , LEU A:266 , PCW A:1033
binding site for residue PCW A 1025
24
AE6
SOFTWARE
GLY A:831 , TRP A:832 , LEU A:992 , PCW A:1037
binding site for residue PCW A 1026
25
AE7
SOFTWARE
ARG A:63
binding site for residue PCW A 1027
26
AE8
SOFTWARE
LEU A:49 , TYR A:949
binding site for residue PCW A 1028
27
AE9
SOFTWARE
PHE A:986 , ARG A:989
binding site for residue PCW A 1029
28
AF1
SOFTWARE
TRP A:928 , PCW A:1032
binding site for residue PCW A 1030
29
AF2
SOFTWARE
PCW A:1008 , PCW A:1017 , PCW A:1021
binding site for residue PCW A 1031
30
AF3
SOFTWARE
PCW A:1030
binding site for residue PCW A 1032
31
AF4
SOFTWARE
PCW A:1025
binding site for residue PCW A 1033
32
AF5
SOFTWARE
LYS A:262
binding site for residue PCW A 1034
33
AF6
SOFTWARE
PCW A:1011
binding site for residue PCW A 1035
34
AF7
SOFTWARE
GLN A:108 , ARG A:324 , PCW A:1023
binding site for residue PCW A 1036
35
AF8
SOFTWARE
TYR A:867 , PCW A:1014 , PCW A:1026
binding site for residue PCW A 1037
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
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Info
all CATH domains
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Pfam Domains
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Info
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Asymmetric Unit 1
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