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5XA8
Asym. Unit
Info
Asym.Unit (365 KB)
Biol.Unit 1 (352 KB)
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(1)
Title
:
COMPLETE STRUCTURE FACTORS AND AN ATOMIC MODEL OF THE CALCIUM PUMP (SERCA1A) AND ASSOCIATED PHOSPHOLIPIDS IN THE E1-ALF4-ADP-2CA2+ CRYSTALS
Authors
:
Y. Norimatsu, K. Hasegawa, N. Shimizu, C. Toyoshima
Date
:
11 Mar 17 (Deposition) - 17 May 17 (Release) - 17 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
P-Type Atpase, Hydrolase, Calcium Transport, Calcium Binding, Endoplasmic Reticulum, Sarcoplasmic Reticulum, Met Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Norimatsu, K. Hasegawa, N. Shimizu, C. Toyoshima
Protein-Phospholipid Interplay Revealed With Crystals Of A Calcium Pump.
Nature 2017
[
close entry info
]
Hetero Components
(6, 53)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
3a: TETRAFLUOROALUMINATE ION (ALFa)
4a: CALCIUM ION (CAa)
4b: CALCIUM ION (CAb)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
6a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWa)
6aa: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaa)
6ab: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWab)
6ac: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWac)
6ad: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWad)
6ae: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWae)
6af: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaf)
6ag: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWag)
6ah: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWah)
6ai: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWai)
6aj: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaj)
6ak: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWak)
6al: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWal)
6am: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWam)
6an: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWan)
6ao: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWao)
6ap: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWap)
6aq: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaq)
6ar: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWar)
6as: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWas)
6at: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWat)
6b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWb)
6c: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWc)
6d: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWd)
6e: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWe)
6f: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWf)
6g: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWg)
6h: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWh)
6i: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWi)
6j: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWj)
6k: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWk)
6l: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWl)
6m: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWm)
6n: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWn)
6o: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWo)
6p: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWp)
6q: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWq)
6r: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWr)
6s: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWs)
6t: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWt)
6u: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWu)
6v: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWv)
6w: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWw)
6x: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWx)
6y: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWy)
6z: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
3
ALF
1
Ligand/Ion
TETRAFLUOROALUMINATE ION
4
CA
2
Ligand/Ion
CALCIUM ION
5
MG
2
Ligand/Ion
MAGNESIUM ION
6
PCW
46
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
[
close Hetero Component info
]
Sites
(50, 50)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
44: AG8 (SOFTWARE)
45: AG9 (SOFTWARE)
46: AH1 (SOFTWARE)
47: AH2 (SOFTWARE)
48: AH3 (SOFTWARE)
49: AH4 (SOFTWARE)
50: AH5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:768 , GLU A:771 , THR A:799 , ASP A:800 , GLU A:908 , HOH A:1112 , HOH A:1139
binding site for residue CA A 1001
02
AC2
SOFTWARE
VAL A:304 , ALA A:305 , ILE A:307 , GLU A:309 , ASN A:796 , ASP A:800
binding site for residue CA A 1002
03
AC3
SOFTWARE
ALF A:1004 , ADP A:1006 , HOH A:1127 , HOH A:1141 , HOH A:1211
binding site for residue MG A 1003
04
AC4
SOFTWARE
ASP A:351 , LYS A:352 , THR A:353 , THR A:625 , GLY A:626 , LYS A:684 , ASN A:706 , MG A:1003 , MG A:1005 , ADP A:1006 , HOH A:1122 , HOH A:1141 , HOH A:1211
binding site for residue ALF A 1004
05
AC5
SOFTWARE
ASP A:351 , THR A:353 , ASP A:703 , ALF A:1004 , HOH A:1122 , HOH A:1211
binding site for residue MG A 1005
06
AC6
SOFTWARE
THR A:353 , GLU A:439 , GLU A:442 , PHE A:487 , ARG A:489 , MET A:494 , LYS A:515 , GLY A:516 , ARG A:560 , LEU A:562 , THR A:625 , GLY A:626 , ASP A:627 , ARG A:678 , ASN A:706 , MG A:1003 , ALF A:1004 , HOH A:1111 , HOH A:1114 , HOH A:1127 , HOH A:1141
binding site for residue ADP A 1006
07
AC7
SOFTWARE
PCW A:1022 , PCW A:1023 , PCW A:1025 , PCW A:1044
binding site for residue PCW A 1007
08
AC8
SOFTWARE
ARG A:63 , PCW A:1019 , PCW A:1037 , PCW A:1050
binding site for residue PCW A 1008
09
AC9
SOFTWARE
PCW A:1010 , PCW A:1020
binding site for residue PCW A 1009
10
AD1
SOFTWARE
LYS A:262 , LEU A:266 , PCW A:1009 , PCW A:1028
binding site for residue PCW A 1010
11
AD2
SOFTWARE
ILE A:289
binding site for residue PCW A 1011
12
AD3
SOFTWARE
GLY A:831 , PCW A:1020 , PCW A:1038
binding site for residue PCW A 1012
13
AD4
SOFTWARE
PCW A:1014 , PCW A:1031 , PCW A:1041
binding site for residue PCW A 1013
14
AD5
SOFTWARE
MET A:923 , PHE A:986 , ARG A:989 , ASN A:990 , PCW A:1013
binding site for residue PCW A 1014
15
AD6
SOFTWARE
LEU A:968
binding site for residue PCW A 1016
16
AD7
SOFTWARE
TRP A:107 , GLN A:108 , ARG A:324 , PHE A:809 , TRP A:932 , VAL A:950 , ASP A:951
binding site for residue PCW A 1017
17
AD8
SOFTWARE
LEU A:49 , ARG A:110
binding site for residue PCW A 1018
18
AD9
SOFTWARE
PCW A:1008
binding site for residue PCW A 1019
19
AE1
SOFTWARE
PCW A:1009 , PCW A:1012 , PCW A:1048
binding site for residue PCW A 1020
20
AE2
SOFTWARE
ILE A:931 , PHE A:945 , TYR A:949
binding site for residue PCW A 1021
21
AE3
SOFTWARE
PCW A:1007
binding site for residue PCW A 1022
22
AE4
SOFTWARE
PCW A:1007 , PCW A:1046
binding site for residue PCW A 1023
23
AE5
SOFTWARE
ALA A:780 , PCW A:1032 , PCW A:1034 , PCW A:1037
binding site for residue PCW A 1024
24
AE6
SOFTWARE
PCW A:1007
binding site for residue PCW A 1025
25
AE7
SOFTWARE
TYR A:867 , HIS A:868 , PCW A:1036
binding site for residue PCW A 1026
26
AE8
SOFTWARE
GLU A:45
binding site for residue PCW A 1027
27
AE9
SOFTWARE
PCW A:1010 , PCW A:1049
binding site for residue PCW A 1028
28
AF1
SOFTWARE
PCW A:1030 , PCW A:1043
binding site for residue PCW A 1029
29
AF2
SOFTWARE
LYS A:972 , PCW A:1029 , PCW A:1042 , PCW A:1046
binding site for residue PCW A 1030
30
AF3
SOFTWARE
PCW A:1013 , PCW A:1051 , PCW A:1052
binding site for residue PCW A 1031
31
AF4
SOFTWARE
HIS A:278 , GLY A:782 , MET A:874 , PCW A:1024 , PCW A:1040
binding site for residue PCW A 1032
32
AF5
SOFTWARE
LEU A:781 , THR A:871 , HIS A:872 , PCW A:1024 , PCW A:1036
binding site for residue PCW A 1034
33
AF6
SOFTWARE
LEU A:273 , ILE A:276 , GLY A:277 , ASN A:280
binding site for residue PCW A 1035
34
AF7
SOFTWARE
PCW A:1026 , PCW A:1034 , PCW A:1049
binding site for residue PCW A 1036
35
AF8
SOFTWARE
PCW A:1008 , PCW A:1024 , PCW A:1040 , PCW A:1041
binding site for residue PCW A 1037
36
AF9
SOFTWARE
SER A:830 , GLY A:831 , TRP A:832 , PHE A:835 , PCW A:1012 , PCW A:1039
binding site for residue PCW A 1038
37
AG1
SOFTWARE
TRP A:288 , PCW A:1038
binding site for residue PCW A 1039
38
AG2
SOFTWARE
PCW A:1032 , PCW A:1037 , PCW A:1045
binding site for residue PCW A 1040
39
AG3
SOFTWARE
PCW A:1013 , PCW A:1037
binding site for residue PCW A 1041
40
AG4
SOFTWARE
PCW A:1030
binding site for residue PCW A 1042
41
AG5
SOFTWARE
PCW A:1029
binding site for residue PCW A 1043
42
AG6
SOFTWARE
PCW A:1007
binding site for residue PCW A 1044
43
AG7
SOFTWARE
TYR A:991 , PCW A:1040
binding site for residue PCW A 1045
44
AG8
SOFTWARE
LEU A:968 , LYS A:972 , PCW A:1023 , PCW A:1030
binding site for residue PCW A 1046
45
AG9
SOFTWARE
PHE A:88
binding site for residue PCW A 1047
46
AH1
SOFTWARE
PCW A:1020
binding site for residue PCW A 1048
47
AH2
SOFTWARE
PCW A:1028 , PCW A:1036
binding site for residue PCW A 1049
48
AH3
SOFTWARE
ILE A:54 , PCW A:1008 , PCW A:1052
binding site for residue PCW A 1050
49
AH4
SOFTWARE
TRP A:50 , PCW A:1031
binding site for residue PCW A 1051
50
AH5
SOFTWARE
PCW A:1031 , PCW A:1050
binding site for residue PCW A 1052
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
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Asym.Unit (365 KB)
Header - Asym.Unit
Biol.Unit 1 (352 KB)
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