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5XA7
Asym. Unit
Info
Asym.Unit (351 KB)
Biol.Unit 1 (340 KB)
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(1)
Title
:
COMPLETE STRUCTURE FACTORS AND AN ATOMIC MODEL OF THE CALCIUM PUMP (SERCA1A) AND ASSOCIATED PHOSPHOLIPIDS IN THE E1-2CA2+ CRYSTALS
Authors
:
Y. Norimatsu, K. Hasegawa, N. Shimizu, C. Toyoshima
Date
:
11 Mar 17 (Deposition) - 17 May 17 (Release) - 17 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
P-Type Atpase, Hydrolase, Calcium Transport, Calcium Binding, Endoplasmic Reticulum, Sarcoplasmic Reticulum, Met Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Norimatsu, K. Hasegawa, N. Shimizu, C. Toyoshima
Protein-Phospholipid Interplay Revealed With Crystals Of A Calcium Pump.
Nature 2017
[
close entry info
]
Hetero Components
(4, 38)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: SODIUM ION (NAa)
4a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWa)
4aa: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaa)
4ab: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWab)
4ac: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWac)
4ad: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWad)
4ae: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWae)
4af: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWaf)
4ag: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWag)
4ah: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWah)
4b: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWb)
4c: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWc)
4d: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWd)
4e: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWe)
4f: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWf)
4g: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWg)
4h: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWh)
4i: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWi)
4j: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWj)
4k: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWk)
4l: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWl)
4m: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWm)
4n: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWn)
4o: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWo)
4p: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWp)
4q: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWq)
4r: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWr)
4s: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWs)
4t: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWt)
4u: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWu)
4v: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWv)
4w: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWw)
4x: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWx)
4y: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWy)
4z: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
CA
2
Ligand/Ion
CALCIUM ION
3
NA
1
Ligand/Ion
SODIUM ION
4
PCW
34
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:304 , ALA A:305 , ILE A:307 , GLU A:309 , ASN A:796 , ASP A:800
binding site for residue CA A 1001
02
AC2
SOFTWARE
ASN A:768 , GLU A:771 , THR A:799 , ASP A:800 , GLU A:908 , HOH A:1106 , HOH A:1116
binding site for residue CA A 1002
03
AC3
SOFTWARE
LEU A:711 , LYS A:712 , ALA A:714 , GLU A:732
binding site for residue NA A 1003
04
AC4
SOFTWARE
LYS A:262 , PCW A:1005
binding site for residue PCW A 1004
05
AC5
SOFTWARE
LYS A:262 , PCW A:1004
binding site for residue PCW A 1005
06
AC6
SOFTWARE
VAL A:263
binding site for residue PCW A 1006
07
AC7
SOFTWARE
GLY A:831 , TRP A:832 , PCW A:1008
binding site for residue PCW A 1007
08
AC8
SOFTWARE
LEU A:968 , LYS A:972 , PCW A:1007 , PCW A:1022
binding site for residue PCW A 1008
09
AC9
SOFTWARE
PCW A:1010
binding site for residue PCW A 1009
10
AD1
SOFTWARE
PHE A:986 , PCW A:1009 , PCW A:1025
binding site for residue PCW A 1010
11
AD2
SOFTWARE
ALA A:780 , LEU A:781 , THR A:871 , MET A:923 , GLU A:982 , PHE A:986 , ASN A:990
binding site for residue PCW A 1011
12
AD3
SOFTWARE
MET A:923 , ARG A:924 , PRO A:926 , TRP A:928 , VAL A:929
binding site for residue PCW A 1012
13
AD4
SOFTWARE
TRP A:928 , VAL A:929 , PCW A:1014 , PCW A:1024 , PCW A:1031
binding site for residue PCW A 1013
14
AD5
SOFTWARE
ILE A:931 , PCW A:1013
binding site for residue PCW A 1014
15
AD6
SOFTWARE
PCW A:1027 , PCW A:1030
binding site for residue PCW A 1015
16
AD7
SOFTWARE
ARG A:110
binding site for residue PCW A 1016
17
AD8
SOFTWARE
PCW A:1018 , PCW A:1019
binding site for residue PCW A 1017
18
AD9
SOFTWARE
GLU A:83 , THR A:84 , ILE A:85 , PHE A:88 , VAL A:89 , PHE A:92 , LEU A:98 , ILE A:99 , ALA A:102 , PCW A:1017
binding site for residue PCW A 1018
19
AE1
SOFTWARE
PCW A:1017 , PCW A:1026
binding site for residue PCW A 1019
20
AE2
SOFTWARE
TYR A:949 , LEU A:964
binding site for residue PCW A 1021
21
AE3
SOFTWARE
LYS A:972 , PCW A:1008
binding site for residue PCW A 1022
22
AE4
SOFTWARE
ILE A:973 , PCW A:1024
binding site for residue PCW A 1023
23
AE5
SOFTWARE
PCW A:1013 , PCW A:1023 , PCW A:1031
binding site for residue PCW A 1024
24
AE6
SOFTWARE
GLY A:277 , ASN A:280 , PCW A:1010 , PCW A:1032
binding site for residue PCW A 1025
25
AE7
SOFTWARE
PCW A:1019 , PCW A:1034
binding site for residue PCW A 1026
26
AE8
SOFTWARE
PCW A:1015
binding site for residue PCW A 1027
27
AE9
SOFTWARE
PCW A:1029 , PCW A:1036
binding site for residue PCW A 1028
28
AF1
SOFTWARE
PCW A:1028 , PCW A:1030 , PCW A:1037
binding site for residue PCW A 1029
29
AF2
SOFTWARE
PCW A:1015 , PCW A:1029
binding site for residue PCW A 1030
30
AF3
SOFTWARE
PCW A:1013 , PCW A:1024
binding site for residue PCW A 1031
31
AF4
SOFTWARE
PCW A:1025
binding site for residue PCW A 1032
32
AF5
SOFTWARE
LEU A:75
binding site for residue PCW A 1033
33
AF6
SOFTWARE
PCW A:1026
binding site for residue PCW A 1034
34
AF7
SOFTWARE
SER A:287 , TRP A:288
binding site for residue PCW A 1035
35
AF8
SOFTWARE
GLN A:56 , TRP A:77 , GLU A:79 , GLU A:80 , PCW A:1028
binding site for residue PCW A 1036
36
AF9
SOFTWARE
PCW A:1029
binding site for residue PCW A 1037
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (351 KB)
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