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Asym. Unit
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Asym.Unit (258 KB)
Biol.Unit 1 (249 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE NUCLEOSOME CONTAINING H3.3 AT 2.18 ANGSTROM RESOLUTION
Authors
:
Y. Arimura, H. Taguchi, H. Kurumizaka
Date
:
27 Feb 17 (Deposition) - 19 Apr 17 (Release) - 24 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.18
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Keywords
:
Chromatin, Nucleosome, Histone Variant, Structural Protein-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Taguchi, Y. Xie, N. Horikoshi, K. Maehara, A. Harada, J. Nogami, K. Sato, Y. Arimura, A. Osakabe, T. Kujirai, T. Iwasaki, Y. Semba, T. Tachibana, H. Kimura, Y. Ohkawa, H. Kurumizaka
Crystal Structure And Characterization Of Novel Human Histone H3 Variants, H3. 6, H3. 7, And H3. 8
Biochemistry V. 56 2184 2017
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Hetero Components
(2, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
2g: MANGANESE (II) ION (MNg)
2h: MANGANESE (II) ION (MNh)
2i: MANGANESE (II) ION (MNi)
2j: MANGANESE (II) ION (MNj)
2k: MANGANESE (II) ION (MNk)
2l: MANGANESE (II) ION (MNl)
2m: MANGANESE (II) ION (MNm)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
MN
13
Ligand/Ion
MANGANESE (II) ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PRO A:121 , LYS A:122 , HOH A:327
binding site for residue CL A 201
02
AC2
SOFTWARE
GLY C:44 , GLY C:46 , ALA C:47 , THR D:90 , SER D:91 , DT J:258
binding site for residue CL C 201
03
AC3
SOFTWARE
PRO E:121 , LYS E:122
binding site for residue CL E 201
04
AC4
SOFTWARE
HOH C:313 , HOH C:317 , VAL D:48 , HOH D:208 , ASP E:77 , HOH E:320
binding site for residue MN E 202
05
AC5
SOFTWARE
GLY G:46 , ALA G:47 , THR H:90 , SER H:91
binding site for residue CL G 2001
06
AC6
SOFTWARE
HOH I:334 , HOH I:341 , HOH I:377 , HOH I:379 , HOH J:3147 , HOH J:3165
binding site for residue MN I 201
07
AC7
SOFTWARE
DG I:134
binding site for residue MN I 202
08
AC8
SOFTWARE
DG I:68
binding site for residue MN I 203
09
AC9
SOFTWARE
DG I:121 , HOH I:306 , HOH I:352 , HOH I:380 , HOH J:3157
binding site for residue MN I 204
10
AD1
SOFTWARE
DA I:27 , DT I:118 , HOH I:355 , HOH I:361 , HOH I:382
binding site for residue MN I 205
11
AD2
SOFTWARE
DG I:131
binding site for residue MN I 206
12
AD3
SOFTWARE
DG J:267 , HOH J:3112 , HOH J:3119 , HOH J:3123 , HOH J:3167 , HOH J:3173
binding site for residue MN J 3001
13
AD4
SOFTWARE
HOH I:325 , HOH I:346 , HOH I:376 , HOH J:3101
binding site for residue MN J 3002
14
AD5
SOFTWARE
DG J:280
binding site for residue MN J 3003
15
AD6
SOFTWARE
DG J:185 , DG J:186
binding site for residue MN J 3004
16
AD7
SOFTWARE
DG J:217 , HOH J:3103 , HOH J:3172
binding site for residue MN J 3005
17
AD8
SOFTWARE
DT J:183
binding site for residue MN J 3006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (258 KB)
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