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Asym. Unit
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Asym.Unit (318 KB)
Biol.Unit 1 (307 KB)
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(1)
Title
:
HEPATITIS B VIRUS CORE PROTEIN Y132A MUTANT IN COMPLEX WITH HETEROARYLDIHYDROPYRIMIDINE (HAP_R01)
Authors
:
Z. Zhou, Z. H. Xu
Date
:
01 Dec 16 (Deposition) - 22 Feb 17 (Release) - 22 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Hepatitis B Virus, Hbv, Core Protein, Capsid, Y132A Dimer, Y132A Hexamer, Heteroaryldihydropyrimidine, Hap, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhou, T. Hu, X. Zhou, S. Wildum, F. Garcia-Alcalde, Z. H. Xu, D. Wu, Y. Mao, X. Tian, Y. Zhou, F. Shen, Z. Zhang, G. Tang, I. Najera, G. Yang, H. C. Shen, J. A. T. Young, N. Qin
Heteroaryldihydropyrimidine (Hap) And Sulfamoylbenzamide (Sba) Inhibit Hepatitis B Virus Replication By Different Molecular Mechanisms
Sci Rep V. 7 42374 2017
[
close entry info
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Hetero Components
(4, 22)
Info
All Hetero Components
1a: (2S)-1-[[(4R)-4-(2-CHLORANYL-4-FLU... (7TLa)
1b: (2S)-1-[[(4R)-4-(2-CHLORANYL-4-FLU... (7TLb)
1c: (2S)-1-[[(4R)-4-(2-CHLORANYL-4-FLU... (7TLc)
1d: (2S)-1-[[(4R)-4-(2-CHLORANYL-4-FLU... (7TLd)
1e: (2S)-1-[[(4R)-4-(2-CHLORANYL-4-FLU... (7TLe)
1f: (2S)-1-[[(4R)-4-(2-CHLORANYL-4-FLU... (7TLf)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
4a: ISOPROPYL ALCOHOL (IPAa)
4b: ISOPROPYL ALCOHOL (IPAb)
4c: ISOPROPYL ALCOHOL (IPAc)
4d: ISOPROPYL ALCOHOL (IPAd)
4e: ISOPROPYL ALCOHOL (IPAe)
4f: ISOPROPYL ALCOHOL (IPAf)
4g: ISOPROPYL ALCOHOL (IPAg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
7TL
6
Ligand/Ion
(2S)-1-[[(4R)-4-(2-CHLORANYL-4-FLUORANYL-PHENYL)-5-METHOXYCARBONYL-2-(1,3-THIAZOL-2-YL)-1,4-DIHYDROPYRIMIDIN-6-YL]METHYL]-4,4-BIS(FLUORANYL)PYRROLIDINE-2-CARBOXYLIC ACID
2
CL
3
Ligand/Ion
CHLORIDE ION
3
GOL
6
Ligand/Ion
GLYCEROL
4
IPA
7
Ligand/Ion
ISOPROPYL ALCOHOL
[
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]
Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:23 , PRO A:25 , ASP A:29 , LEU A:30 , THR A:33 , LEU A:37 , TRP A:102 , ILE A:105 , SER A:106 , THR A:109 , PHE A:110 , TYR A:118 , ILE A:139 , LEU A:140 , SER A:141 , HOH A:316 , HOH A:317 , VAL D:124 , TRP D:125 , ARG D:127 , THR D:128 , ALA D:132 , ARG D:133 , PRO D:134
binding site for residue 7TL A 201
02
AC2
SOFTWARE
LYS A:96 , LEU A:100 , GLN B:57 , CYS B:61 , ASP B:64
binding site for residue IPA A 202
03
AC3
SOFTWARE
GLN A:57 , LEU A:60 , CYS A:61 , ASP A:64 , LYS B:96 , LEU B:100
binding site for residue IPA A 203
04
AC4
SOFTWARE
ALA A:131 , ARG A:133 , PRO F:135 , ASN F:136 , ALA F:137
binding site for residue IPA A 204
05
AC5
SOFTWARE
PHE B:23 , PRO B:25 , ASP B:29 , LEU B:30 , THR B:33 , LEU B:37 , TRP B:102 , ILE B:105 , SER B:106 , PHE B:110 , TYR B:118 , ILE B:139 , LEU B:140 , SER B:141 , HOH B:319 , HOH B:343 , VAL C:124 , TRP C:125 , ARG C:127 , THR C:128 , ALA C:132 , ARG C:133 , PRO C:134
binding site for residue 7TL B 201
06
AC6
SOFTWARE
ASP A:2 , ARG B:39 , GLU B:43
binding site for residue CL B 203
07
AC7
SOFTWARE
PRO B:135 , ASN B:136 , ALA B:137 , PRO C:130 , ALA C:131 , ARG C:133 , PRO C:135
binding site for residue GOL B 204
08
AC8
SOFTWARE
ALA B:35 , ALA B:36 , LEU B:37 , ARG B:39 , ASP B:40 , HOH B:354
binding site for residue GOL B 205
09
AC9
SOFTWARE
PHE C:23 , PRO C:25 , ASP C:29 , LEU C:30 , THR C:33 , LEU C:37 , TRP C:102 , ILE C:105 , SER C:106 , PHE C:110 , TYR C:118 , ILE C:139 , LEU C:140 , SER C:141 , HOH C:322 , VAL F:124 , TRP F:125 , ARG F:127 , THR F:128 , ALA F:132 , ARG F:133 , PRO F:134
binding site for residue 7TL C 201
10
AD1
SOFTWARE
GLN C:57 , ASP C:64 , LYS D:96 , PHE D:97 , LEU D:100
binding site for residue IPA C 202
11
AD2
SOFTWARE
ASP C:2 , ASP C:4 , LYS C:7 , HOH C:334
binding site for residue GOL C 203
12
AD3
SOFTWARE
PHE D:23 , PRO D:25 , ASP D:29 , LEU D:30 , THR D:33 , LEU D:37 , TRP D:102 , ILE D:105 , SER D:106 , THR D:109 , PHE D:110 , TYR D:118 , ILE D:139 , LEU D:140 , SER D:141 , HOH D:339 , VAL E:124 , TRP E:125 , ARG E:127 , THR E:128 , ALA E:132 , ARG E:133 , PRO E:134
binding site for residue 7TL D 201
13
AD4
SOFTWARE
LYS C:96 , LEU C:100 , GLN D:57 , LEU D:60 , CYS D:61 , ASP D:64
binding site for residue IPA D 202
14
AD5
SOFTWARE
HOH D:345 , HOH D:390
binding site for residue CL D 203
15
AD6
SOFTWARE
VAL B:124 , TRP B:125 , ARG B:127 , THR B:128 , ALA B:132 , ARG B:133 , PRO B:134 , PHE E:23 , PRO E:25 , ASP E:29 , LEU E:30 , THR E:33 , LEU E:37 , TRP E:102 , ILE E:105 , SER E:106 , THR E:109 , PHE E:110 , TYR E:118 , ILE E:139 , LEU E:140 , SER E:141 , HOH E:318 , HOH E:329
binding site for residue 7TL E 201
16
AD7
SOFTWARE
LEU E:37 , TYR E:38 , ARG E:39 , ASP E:40
binding site for residue IPA E 202
17
AD8
SOFTWARE
GLN E:57 , LEU E:60 , ASP E:64 , LYS F:96 , LEU F:100
binding site for residue IPA E 203
18
AD9
SOFTWARE
PRO D:135 , ASN D:136 , ALA D:137 , ALA E:131 , ARG E:133
binding site for residue GOL E 204
19
AE1
SOFTWARE
VAL A:124 , TRP A:125 , ARG A:127 , THR A:128 , ALA A:132 , ARG A:133 , PRO A:134 , PHE F:23 , PRO F:25 , ASP F:29 , LEU F:30 , THR F:33 , LEU F:37 , TRP F:102 , ILE F:105 , SER F:106 , THR F:109 , PHE F:110 , TYR F:118 , ILE F:139 , LEU F:140 , SER F:141 , HOH F:307 , HOH F:326
binding site for residue 7TL F 201
20
AE2
SOFTWARE
PRO C:135 , ASN C:136 , ALA C:137 , ALA F:131 , ARG F:133 , HOH F:318
binding site for residue GOL F 202
21
AE3
SOFTWARE
THR A:12 , ALA F:35 , ALA F:36 , ARG F:39
binding site for residue GOL F 203
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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