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5W4B
Asym. Unit
Info
Asym.Unit (864 KB)
Biol.Unit 1 (571 KB)
Biol.Unit 2 (568 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF HUMAN S-ADENOSYLHOMOCYSTEINE HYDROLASE (AHCY) BOUND TO BENZOTHIAZOLE INHIBITOR
Authors
:
D. R. Dougan, J. D. Lawson, W. Lane
Date
:
09 Jun 17 (Deposition) - 28 Jun 17 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D (2x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Uchiyama, D. R. Dougan, J. D. Lawson, H. Kimura, S. I. Matsumoto, Y. Tanaka, T. Kawamoto
Identification Of Ahcy Inhibitors Using Novel High-Throughput Mass Spectrometry.
Biochem. Biophys. Res. 2017 Commun.
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Hetero Components
(3, 13)
Info
All Hetero Components
1a: 4-[(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDA... (9W4a)
1b: 4-[(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDA... (9W4b)
1c: 4-[(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDA... (9W4c)
1d: 4-[(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDA... (9W4d)
1e: 4-[(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDA... (9W4e)
1f: 4-[(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDA... (9W4f)
2a: 1,2-ETHANEDIOL (EDOa)
3a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
3b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
3c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
3d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
3e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
3f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
9W4
6
Ligand/Ion
4-[(2,5-DIOXO-2,5-DIHYDRO-1H-IMIDAZOL-1-YL)METHYL]-N-[2-(MORPHOLIN-4-YL)-1,3-BENZOTHIAZOL-6-YL]BENZAMIDE
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
NAD
6
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:190 , ASN A:191 , GLY A:222 , ASP A:223 , VAL A:224 , THR A:242 , GLU A:243 , ILE A:244 , ASP A:245 , ASN A:248 , THR A:275 , THR A:276 , GLY A:277 , CYS A:278 , ILE A:281 , ILE A:299 , GLY A:300 , HIS A:301 , LEU A:344 , ASN A:346 , HOH A:611 , HOH A:634 , HOH A:649 , HOH A:682 , GLN B:413 , LYS B:426 , TYR B:430
binding site for residue NAD A 501
02
AC2
SOFTWARE
HIS A:55 , THR A:57 , GLU A:59 , ASN A:80 , GLN A:324 , ARG A:343 , LEU A:347 , HIS A:353 , MET A:358 , HOH A:645
binding site for residue 9W4 A 502
03
AC3
SOFTWARE
GLN A:413 , LYS A:426 , TYR A:430 , ASP B:190 , ASN B:191 , GLY B:222 , ASP B:223 , VAL B:224 , THR B:242 , GLU B:243 , ILE B:244 , ASP B:245 , ASN B:248 , THR B:275 , THR B:276 , GLY B:277 , CYS B:278 , ILE B:281 , ILE B:299 , GLY B:300 , HIS B:301 , LEU B:344 , ASN B:346 , HOH B:616 , HOH B:631 , HOH B:652 , HOH B:664 , HOH B:684 , HOH B:695 , HOH B:706
binding site for residue NAD B 501
04
AC4
SOFTWARE
HIS B:55 , THR B:57 , GLU B:59 , ASN B:80 , PHE B:82 , SER B:83 , GLN B:324 , ARG B:343 , LEU B:347 , HIS B:353 , MET B:358 , HOH B:611
binding site for residue 9W4 B 502
05
AC5
SOFTWARE
ASP C:190 , ASN C:191 , GLY C:222 , ASP C:223 , VAL C:224 , THR C:242 , GLU C:243 , ILE C:244 , ASP C:245 , ASN C:248 , THR C:275 , THR C:276 , GLY C:277 , CYS C:278 , ILE C:281 , ILE C:299 , GLY C:300 , HIS C:301 , ASN C:346 , HOH C:601 , HOH C:644 , HOH C:651 , HOH C:656 , HOH C:673 , HOH C:681 , HOH C:685 , GLN D:413 , LYS D:426 , TYR D:430
binding site for residue NAD C 501
06
AC6
SOFTWARE
HIS C:55 , THR C:57 , GLU C:59 , ASN C:80 , ARG C:343 , LEU C:347 , HIS C:353 , MET C:358
binding site for residue 9W4 C 502
07
AC7
SOFTWARE
GLN C:413 , LYS C:426 , TYR C:430 , ASP D:190 , ASN D:191 , GLY D:222 , ASP D:223 , VAL D:224 , THR D:242 , GLU D:243 , ILE D:244 , ASP D:245 , ASN D:248 , THR D:275 , THR D:276 , GLY D:277 , CYS D:278 , ILE D:281 , ILE D:299 , GLY D:300 , HIS D:301 , ASN D:346 , HOH D:608 , HOH D:644 , HOH D:658 , HOH D:682 , HOH D:691 , HOH D:718 , HOH D:734
binding site for residue NAD D 501
08
AC8
SOFTWARE
HIS D:55 , THR D:57 , GLU D:59 , ASN D:80 , PHE D:82 , GLN D:324 , ARG D:343 , LEU D:347 , HIS D:353 , MET D:358
binding site for residue 9W4 D 502
09
AC9
SOFTWARE
ASP E:190 , ASN E:191 , GLY E:222 , ASP E:223 , VAL E:224 , THR E:242 , GLU E:243 , ILE E:244 , ASP E:245 , ASN E:248 , THR E:275 , THR E:276 , GLY E:277 , CYS E:278 , ILE E:281 , ILE E:299 , GLY E:300 , HIS E:301 , LEU E:344 , ASN E:346 , HOH E:619 , HOH E:623 , HOH E:651 , HOH E:673 , HOH E:684 , HOH E:685 , GLN F:413 , LYS F:426 , TYR F:430
binding site for residue NAD E 501
10
AD1
SOFTWARE
HIS E:55 , THR E:57 , GLU E:59 , ASN E:80 , SER E:83 , GLN E:324 , ARG E:343 , LEU E:347 , HIS E:353 , MET E:358 , EDO E:503 , HOH E:696 , HOH E:732
binding site for residue 9W4 E 502
11
AD2
SOFTWARE
ARG E:343 , LEU E:344 , 9W4 E:502 , HOH E:620
binding site for residue EDO E 503
12
AD3
SOFTWARE
GLN E:413 , LYS E:426 , TYR E:430 , ASP F:190 , ASN F:191 , GLY F:222 , ASP F:223 , VAL F:224 , GLU F:243 , ILE F:244 , ASP F:245 , ASN F:248 , THR F:275 , THR F:276 , GLY F:277 , CYS F:278 , ILE F:281 , ILE F:299 , GLY F:300 , HIS F:301 , ASN F:346 , HIS F:353 , HOH F:656 , HOH F:675 , HOH F:677 , HOH F:696 , HOH F:703 , HOH F:714 , HOH F:724
binding site for residue NAD F 501
13
AD4
SOFTWARE
HIS F:55 , THR F:57 , GLU F:59 , ASN F:80 , PHE F:82 , SER F:83 , GLN F:324 , ARG F:343 , LEU F:347 , MET F:351 , HIS F:353 , MET F:358 , HOH F:640 , HOH F:644
binding site for residue 9W4 F 502
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SAPs(SNPs)/Variants
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Exons
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Asym.Unit (864 KB)
Header - Asym.Unit
Biol.Unit 1 (571 KB)
Header - Biol.Unit 1
Biol.Unit 2 (568 KB)
Header - Biol.Unit 2
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