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5VZC
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
POST-CATALYTIC COMPLEX OF HUMAN POLYMERASE MU (G433S) MUTANT WITH INCOMING DTTP
Authors
:
A. F. Moon, J. M. Pryor, D. A. Ramsden, T. A. Kunkel, K. Bebenek, L. C. Pede
Date
:
27 May 17 (Deposition) - 05 Jul 17 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,D,P,T
Biol. Unit 1: A,D,P,T (1x)
Keywords
:
Family X, Nonhomologous End-Joining, Dna Double Strand Break Repair, Ribonucleotide Incorporation, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. F. Moon, J. M. Pryor, D. A. Ramsden, T. A. Kunkel, K. Bebenek, L. C. Pedersen
Structural Accommodation Of Ribonucleotide Incorporation By The Dna Repair Enzyme Polymerase Mu
Nucleic Acids Res. 2017
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Hetero Components
(6, 11)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
3a: GLYCEROL (GOLa)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: THYMIDINE-5'-TRIPHOSPHATE (TTPa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
1
Ligand/Ion
GLYCEROL
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
NA
2
Ligand/Ion
SODIUM ION
6
TTP
1
Ligand/Ion
THYMIDINE-5'-TRIPHOSPHATE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:330 , ASP A:332 , NA A:503 , TTP A:505 , HOH A:737 , DT P:5
binding site for residue MG A 501
02
AC2
SOFTWARE
ARG A:445 , ASN A:457 , SER A:458 , EDO A:506 , DA T:7
binding site for residue CL A 502
03
AC3
SOFTWARE
ASP A:330 , ASP A:332 , ASP A:418 , MG A:501 , DA P:4 , DT P:5
binding site for residue NA A 503
04
AC4
SOFTWARE
THR A:241 , ILE A:243 , VAL A:246 , HOH A:862 , DT P:3 , HOH P:216
binding site for residue NA A 504
05
AC5
SOFTWARE
GLY A:319 , GLY A:320 , ARG A:323 , LYS A:325 , ASP A:330 , ASP A:332 , MG A:501 , HOH A:608 , HOH A:639 , HOH A:682 , HOH A:709 , HOH A:719 , HOH A:731 , HOH A:737 , HOH A:774 , DT P:5 , MG P:101
binding site for residue TTP A 505
06
AC6
SOFTWARE
ARG A:387 , SER A:433 , ARG A:445 , CL A:502 , DA P:4 , DT P:5
binding site for residue EDO A 506
07
AC7
SOFTWARE
THR A:314 , THR A:336 , HOH A:717 , HOH A:721
binding site for residue EDO A 507
08
AC8
SOFTWARE
PHE A:469 , HOH A:673 , HOH A:775
binding site for residue EDO A 508
09
AC9
SOFTWARE
PRO A:190 , SER A:191 , PRO A:192 , GLN A:198 , HOH A:654
binding site for residue EDO A 509
10
AD1
SOFTWARE
PHE A:462 , PHE A:469 , HOH A:620 , HOH A:775 , HOH T:111
binding site for residue GOL A 510
11
AD2
SOFTWARE
TTP A:505 , HOH A:719 , HOH A:731 , HOH A:774 , DT P:5 , HOH P:213
binding site for residue MG P 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (142 KB)
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