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5VSD
Asym. Unit
Info
Asym.Unit (197 KB)
Biol.Unit 1 (187 KB)
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(1)
Title
:
STRUCTURE OF HUMAN GLP SET-DOMAIN (EHMT1) IN COMPLEX WITH INHIBITOR 13
Authors
:
N. Babault, Y. Xiong, J. Liu, J. Jin
Date
:
11 May 17 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Small Molecule Inhibitor Complex, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Xiong, F. Li, N. Babault, H. Wu, A. Dong, H. Zeng, X. Chen, C. H. Arrowsmith, P. J. Brown, J. Liu, M. Vedadi, J. Jin
Structure-Activity Relationship Studies Of G9A-Like Protein (Glp) Inhibitors.
Bioorg. Med. Chem. 2017
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: 6,7-DIMETHOXY-N~2~-METHYL-N~4~-(1-... (9HJa)
1b: 6,7-DIMETHOXY-N~2~-METHYL-N~4~-(1-... (9HJb)
2a: 1,4-DIETHYLENE DIOXIDE (DIOa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: S-ADENOSYLMETHIONINE (SAMa)
4b: S-ADENOSYLMETHIONINE (SAMb)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
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Label:
No.
Name
Count
Type
Full Name
1
9HJ
2
Ligand/Ion
6,7-DIMETHOXY-N~2~-METHYL-N~4~-(1-METHYLPIPERIDIN-4-YL)-N~2~-PROPYLQUINAZOLINE-2,4-DIAMINE
2
DIO
1
Ligand/Ion
1,4-DIETHYLENE DIOXIDE
3
GOL
2
Ligand/Ion
GLYCEROL
4
SAM
2
Ligand/Ion
S-ADENOSYLMETHIONINE
5
ZN
8
Ligand/Ion
ZINC ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET A:1136 , GLY A:1137 , TRP A:1138 , SER A:1172 , TYR A:1173 , ARG A:1197 , PHE A:1198 , ASN A:1200 , HIS A:1201 , TYR A:1242 , PHE A:1246 , CYS A:1256 , ARG A:1257 , HOH A:3125 , HOH A:3177 , HOH A:3202 , HOH A:3226 , HOH A:3261 , HOH A:3287
binding site for residue SAM A 3001
02
AC2
SOFTWARE
CYS A:1062 , CYS A:1075 , CYS A:1105 , CYS A:1109
binding site for residue ZN A 3002
03
AC3
SOFTWARE
CYS A:1068 , CYS A:1105 , CYS A:1111 , CYS A:1115
binding site for residue ZN A 3003
04
AC4
SOFTWARE
CYS A:1062 , CYS A:1064 , CYS A:1068 , CYS A:1073
binding site for residue ZN A 3004
05
AC5
SOFTWARE
CYS A:1203 , CYS A:1256 , CYS A:1258 , CYS A:1263
binding site for residue ZN A 3005
06
AC6
SOFTWARE
ASP A:1162 , ALA A:1165 , ASP A:1166 , ARG A:1168 , ASP A:1171 , LEU A:1174 , ASP A:1176 , CYS A:1186 , ARG A:1245 , PHE A:1246 , ILE A:1249 , LYS A:1250
binding site for residue 9HJ A 3006
07
AC7
SOFTWARE
CYS A:1064 , ILE A:1065 , ASP A:1066 , ASN A:1072 , LEU B:1078 , PHE B:1103
binding site for residue DIO A 3007
08
AC8
SOFTWARE
MET B:1136 , GLY B:1137 , TRP B:1138 , SER B:1172 , TYR B:1173 , ARG B:1197 , PHE B:1198 , ASN B:1200 , HIS B:1201 , TYR B:1242 , CYS B:1256 , ARG B:1257 , HOH B:3216 , HOH B:3222 , HOH B:3249 , HOH B:3263 , HOH B:3285
binding site for residue SAM B 3001
09
AC9
SOFTWARE
CYS B:1062 , CYS B:1075 , CYS B:1105 , CYS B:1109
binding site for residue ZN B 3002
10
AD1
SOFTWARE
CYS B:1068 , CYS B:1105 , CYS B:1111 , CYS B:1115 , ZN B:3004
binding site for residue ZN B 3003
11
AD2
SOFTWARE
CYS B:1062 , CYS B:1064 , CYS B:1068 , CYS B:1073 , ZN B:3003
binding site for residue ZN B 3004
12
AD3
SOFTWARE
CYS B:1203 , CYS B:1256 , CYS B:1258 , CYS B:1263
binding site for residue ZN B 3005
13
AD4
SOFTWARE
ALA B:1165 , ASP B:1166 , ARG B:1168 , ASP B:1171 , LEU B:1174 , ASP B:1176 , ARG B:1245 , PHE B:1246 , ILE B:1249 , LYS B:1250
binding site for residue 9HJ B 3006
14
AD5
SOFTWARE
HOH A:3159 , HOH A:3260 , ARG B:1054
binding site for residue GOL B 3007
15
AD6
SOFTWARE
ASN B:1044 , LEU B:1159 , LEU B:1177 , HIS B:1216 , PHE B:1221 , PRO B:1222 , ARG B:1223 , HOH B:3254
binding site for residue GOL B 3008
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (197 KB)
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