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Biol. Unit 2
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Asym.Unit (530 KB)
Biol.Unit 1 (262 KB)
Biol.Unit 2 (266 KB)
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(1)
Title
:
HORSE LIVER ALCOHOL DEHYDROGENASE COMPLEXED WITH NADH AND N-BENZYFORMAMIDE
Authors
:
B. V. Plapp, E. N. Brown, S. Ramaswamy, S. Baskar Raj
Date
:
24 Apr 17 (Deposition) - 03 May 17 (Release) - 05 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Oxidoreductase, Alcohol Dehydrogenase, N-Benzylformamide, Horse Liver, Nadh
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. V. Plapp, B. R. Savarimuthu, D. J. Ferraro, J. K. Rubach, E. N. Brown, S. Ramaswamy
Horse Liver Alcohol Dehydrogenase: Zinc Coordination And Catalysis.
Biochemistry 2017
(for further references see the
PDB file header
)
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: N-BENZYLFORMAMIDE (BNFa)
1b: N-BENZYLFORMAMIDE (BNFb)
1c: N-BENZYLFORMAMIDE (BNFc)
1d: N-BENZYLFORMAMIDE (BNFd)
2a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
2b: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDb)
3a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
3b: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIb)
3c: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIc)
3d: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAId)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
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No.
Name
Count
Type
Full Name
1
BNF
2
Ligand/Ion
N-BENZYLFORMAMIDE
2
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
3
NAI
2
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC9 (SOFTWARE)
02: AD1 (SOFTWARE)
03: AD2 (SOFTWARE)
04: AD3 (SOFTWARE)
05: AD4 (SOFTWARE)
06: AD5 (SOFTWARE)
07: AD6 (SOFTWARE)
08: AD7 (SOFTWARE)
09: AD8 (SOFTWARE)
10: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC9
SOFTWARE
ARG B:218 , THR B:238 , GLU B:239 , ARG C:218 , GLU C:239
binding site for residue MRD B 405
02
AD1
SOFTWARE
CYS C:46 , HIS C:67 , CYS C:174 , NAI C:403 , BNF C:404
binding site for residue ZN C 401
03
AD2
SOFTWARE
CYS C:97 , CYS C:100 , CYS C:103 , CYS C:111
binding site for residue ZN C 402
04
AD3
SOFTWARE
ARG C:47 , SER C:48 , HIS C:51 , CYS C:174 , THR C:178 , GLY C:199 , GLY C:201 , GLY C:202 , VAL C:203 , ASP C:223 , ILE C:224 , VAL C:268 , ILE C:269 , ARG C:271 , VAL C:292 , GLY C:293 , VAL C:294 , ALA C:317 , ILE C:318 , PHE C:319 , ARG C:369 , ZN C:401 , BNF C:404 , HOH C:512 , HOH C:599 , HOH C:604 , HOH C:623 , HOH C:640 , HOH C:658 , HOH C:720 , HOH C:747
binding site for residue NAI C 403
05
AD4
SOFTWARE
CYS C:46 , SER C:48 , HIS C:67 , PHE C:93 , LEU C:116 , CYS C:174 , ILE C:318 , ZN C:401 , NAI C:403 , LEU D:309
binding site for residue BNF C 404
06
AD5
SOFTWARE
LYS C:338 , LYS C:339 , PHE C:340
binding site for residue MRD C 405
07
AD6
SOFTWARE
CYS D:46 , HIS D:67 , CYS D:174 , NAI D:403 , BNF D:404
binding site for residue ZN D 401
08
AD7
SOFTWARE
CYS D:97 , CYS D:100 , CYS D:103 , CYS D:111
binding site for residue ZN D 402
09
AD8
SOFTWARE
ARG D:47 , SER D:48 , HIS D:51 , CYS D:174 , THR D:178 , GLY D:199 , GLY D:201 , GLY D:202 , VAL D:203 , ASP D:223 , ILE D:224 , LYS D:228 , VAL D:268 , ILE D:269 , ARG D:271 , VAL D:292 , VAL D:294 , ALA D:317 , ILE D:318 , PHE D:319 , ARG D:369 , ZN D:401 , BNF D:404 , HOH D:527 , HOH D:538 , HOH D:607 , HOH D:617 , HOH D:637 , HOH D:684 , HOH D:725
binding site for residue NAI D 403
10
AD9
SOFTWARE
LEU C:309 , CYS D:46 , SER D:48 , HIS D:67 , PHE D:93 , CYS D:174 , VAL D:294 , ILE D:318 , ZN D:401 , NAI D:403
binding site for residue BNF D 404
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (530 KB)
Header - Asym.Unit
Biol.Unit 1 (262 KB)
Header - Biol.Unit 1
Biol.Unit 2 (266 KB)
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