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5VJB
Asym. Unit
Info
Asym.Unit (36 KB)
Biol.Unit 1 (16 KB)
Biol.Unit 2 (16 KB)
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(1)
Title
:
GUANIDINE-II RIBOSWITCH P2 HAIRPIN DIMER WITH 5-BROMOU SUBSTITUTION FROM PSEUDOMONAS AERUGINOSA
Authors
:
C. W. Reiss, S. A. Strobel
Date
:
19 Apr 17 (Deposition) - 28 Jun 17 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Guanidine, Riboswitch, Kissing Loop, Hairpin, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
C. W. Reiss, S. A. Strobel
Structural Basis For Ligand Binding To The Guanidine-Ii Riboswitch.
Rna 2017
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: 5-BROMO-URIDINE-5'-MONOPHOSPHATE (5BUa)
1b: 5-BROMO-URIDINE-5'-MONOPHOSPHATE (5BUb)
1c: 5-BROMO-URIDINE-5'-MONOPHOSPHATE (5BUc)
1d: 5-BROMO-URIDINE-5'-MONOPHOSPHATE (5BUd)
2a: GUANIDINE (GAIa)
2b: GUANIDINE (GAIb)
2c: GUANIDINE (GAIc)
2d: GUANIDINE (GAId)
3a: MAGNESIUM ION (MGa)
4a: SPERMINE (SPMa)
4b: SPERMINE (SPMb)
4c: SPERMINE (SPMc)
4d: SPERMINE (SPMd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
5BU
4
Mod. Nucleotide
5-BROMO-URIDINE-5'-MONOPHOSPHATE
2
GAI
4
Ligand/Ion
GUANIDINE
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
SPM
4
Ligand/Ion
SPERMINE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
G A:6 , A A:7 , C A:8 , G A:9
binding site for residue GAI A 101
02
AC2
SOFTWARE
G A:5 , G A:6 , C A:8 , G A:9 , A A:10 , HOH A:201 , G C:15 , C C:16
binding site for residue SPM A 102
03
AC3
SOFTWARE
G B:6 , A B:7 , C B:8 , G B:9
binding site for residue GAI B 101
04
AC4
SOFTWARE
G B:3 , G B:4 , C B:12 , C B:13 , 5BU B:14
binding site for residue SPM B 102
05
AC5
SOFTWARE
C B:8 , HOH B:201 , HOH B:202 , HOH B:203 , HOH B:204 , HOH B:205
binding site for residue MG B 103
06
AC6
SOFTWARE
G C:6 , A C:7 , C C:8 , G C:9
binding site for residue GAI C 101
07
AC7
SOFTWARE
G A:15 , C A:16 , G C:5 , G C:6 , A C:7 , C C:8 , G C:9
binding site for residue SPM C 102
08
AC8
SOFTWARE
G D:6 , A D:7 , C D:8 , G D:9
binding site for residue GAI D 101
09
AC9
SOFTWARE
G B:5 , G D:5 , G D:6 , C D:8 , G D:9
binding site for residue SPM D 102
10
AD1
SOFTWARE
G B:3 , G B:4 , G B:5 , C B:12 , G B:15 , SPM B:102 , G D:9 , A D:10
binding site for Di-nucleotide C B 13 and 5BU B 14
11
AD2
SOFTWARE
C B:2 , G B:3 , G B:4 , C B:13 , C B:16 , SPM B:102 , G D:3 , G D:4 , G D:9
binding site for Di-nucleotide 5BU B 14 and G B 15
12
AD3
SOFTWARE
G C:3 , G C:4 , G C:5 , C C:12 , G C:15
binding site for Di-nucleotide C C 13 and 5BU C 14
13
AD4
SOFTWARE
G A:5 , G A:6 , SPM A:102 , C C:2 , G C:3 , G C:4 , C C:13 , C C:16
binding site for Di-nucleotide 5BU C 14 and G C 15
14
AD5
SOFTWARE
G D:3 , G D:4 , G D:5 , C D:12 , G D:15
binding site for Di-nucleotide C D 13 and 5BU D 14
15
AD6
SOFTWARE
C B:16 , C D:2 , G D:3 , G D:4 , C D:13 , C D:16
binding site for Di-nucleotide 5BU D 14 and G D 15
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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CATH Domains
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Pfam Domains
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Asym.Unit (36 KB)
Header - Asym.Unit
Biol.Unit 1 (16 KB)
Header - Biol.Unit 1
Biol.Unit 2 (16 KB)
Header - Biol.Unit 2
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