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5V7G
Biol. Unit 1
Info
Asym.Unit (441 KB)
Biol.Unit 1 (216 KB)
Biol.Unit 2 (218 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NADPH-DEPENDENT GLYOXYLATE/HYDROXYPYRUVATE REDUCTASE SMC04462 (SMGHRB) FROM SINORHIZOBIUM MELILOTI IN COMPLEX WITH NADPH AND OXALATE
Authors
:
I. G. Shabalin, D. V. Mason, K. B. Handing, J. Kutner, D. Matelska, D. R. C J. Bonanno, S. C. Almo, W. Minor, New York Structural Genomics Res Consortium (Nysgrc)
Date
:
20 Mar 17 (Deposition) - 29 Mar 17 (Release) - 29 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nadph-Dependent Glyoxylate/Hydroxypyruvate Reductase, Nadp, Nysgrc, Sinorhizobium Meliloti, Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Oxidoreductase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
I. G. Shabalin, K. B. Handing, W. Minor
Evolutionary, Biochemical, And Structural Studies On D-2-Hydroxyacid Dehydrogenases From Sinorhizium Meliloti 1021 Indicate A Subdivision Of The Glyoxylate/Hydroxypyruvate Reductases
To Be Published
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPa)
4b: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPb)
4c: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPc)
4d: NADPH DIHYDRO-NICOTINAMIDE-ADENINE... (NDPd)
5a: OXALATE ION (OXLa)
5b: OXALATE ION (OXLb)
5c: OXALATE ION (OXLc)
5d: OXALATE ION (OXLd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
NDP
2
Ligand/Ion
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE
5
OXL
2
Ligand/Ion
OXALATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:71 , VAL A:72 , GLY A:73 , LEU A:96 , ARG A:230 , HIS A:277 , NDP A:402 , HOH A:504 , HOH A:671
binding site for residue OXL A 401
02
AC2
SOFTWARE
VAL A:72 , VAL A:100 , PHE A:148 , LEU A:150 , GLY A:151 , ARG A:152 , ILE A:153 , THR A:172 , ARG A:173 , THR A:174 , ILE A:200 , VAL A:201 , PRO A:202 , SER A:206 , THR A:207 , VAL A:228 , GLY A:229 , ARG A:230 , ASP A:254 , VAL A:255 , HIS A:277 , ALA A:279 , OXL A:401 , HOH A:503 , HOH A:504 , HOH A:511 , HOH A:536 , HOH A:545 , HOH A:556 , HOH A:590 , HOH A:617 , HOH A:626 , HOH A:636 , HOH A:639 , HOH A:641 , HOH A:644 , HOH A:704 , HOH A:733
binding site for residue NDP A 402
03
AC3
SOFTWARE
VAL A:95 , THR A:285 , HOH A:569 , HOH A:580 , HOH A:620 , HOH A:650 , ARG B:141
binding site for residue GOL A 403
04
AC4
SOFTWARE
ASN A:13 , ARG A:286 , HOH A:777
binding site for residue CL A 404
05
AC5
SOFTWARE
ALA A:191 , GLU A:192 , VAL A:194 , ALA A:218 , LEU A:219 , HOH A:754
binding site for residue NA A 405
06
AC6
SOFTWARE
GLY B:71 , VAL B:72 , GLY B:73 , LEU B:96 , ARG B:230 , HIS B:277 , NDP B:402 , HOH B:501 , HOH B:527 , HOH B:557
binding site for residue OXL B 401
07
AC7
SOFTWARE
VAL B:72 , GLY B:73 , VAL B:100 , PHE B:148 , LEU B:150 , GLY B:151 , ARG B:152 , ILE B:153 , THR B:172 , ARG B:173 , THR B:174 , ILE B:200 , VAL B:201 , PRO B:202 , SER B:206 , THR B:207 , VAL B:228 , GLY B:229 , ARG B:230 , ASP B:254 , HIS B:277 , ALA B:279 , OXL B:401 , HOH B:505 , HOH B:534 , HOH B:543 , HOH B:552 , HOH B:562 , HOH B:606 , HOH B:610 , HOH B:630 , HOH B:641 , HOH B:651 , HOH B:673
binding site for residue NDP B 402
08
AC8
SOFTWARE
ARG A:141 , VAL B:95 , THR B:285 , ALA B:288 , HOH B:511 , HOH B:528
binding site for residue GOL B 403
09
AC9
SOFTWARE
ASN B:13 , ARG B:286 , HOH B:713 , HOH B:766
binding site for residue CL B 404
10
AD1
SOFTWARE
ALA B:191 , GLU B:192 , VAL B:194 , ALA B:218 , LEU B:219 , HOH B:725
binding site for residue NA B 405
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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CATH Domains
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Asymmetric Unit 1
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Asym.Unit (441 KB)
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Biol.Unit 1 (216 KB)
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