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5V6D
Asym. Unit
Info
Asym.Unit (810 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (103 KB)
Biol.Unit 3 (104 KB)
Biol.Unit 4 (106 KB)
Biol.Unit 5 (104 KB)
Biol.Unit 6 (104 KB)
Biol.Unit 7 (103 KB)
Biol.Unit 8 (101 KB)
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Title
:
CRYSTAL STRUCTURE OF NUCLEOSIDE DIPHOSPHATE KINASE FROM NEISSERIA GONORRHOEAE IN COMPLEX WITH CITRATE
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
16 Mar 17 (Deposition) - 19 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: I,J (1x)
Biol. Unit 6: K,L (1x)
Biol. Unit 7: M,N (1x)
Biol. Unit 8: O,P (1x)
Keywords
:
Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Nucleoside Diphosphate Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Abendroth, S. J. Mayclin, D. D. Lorimer, T. E. Edwards
Crystal Structure Of Nucleoside Diphosphate Kinase From Neisseria Gonorrhoeae In Complex With Citrate
To Be Published
[
close entry info
]
Hetero Components
(2, 38)
Info
All Hetero Components
1a: CITRIC ACID (CITa)
1b: CITRIC ACID (CITb)
1c: CITRIC ACID (CITc)
1d: CITRIC ACID (CITd)
1e: CITRIC ACID (CITe)
1f: CITRIC ACID (CITf)
1g: CITRIC ACID (CITg)
1h: CITRIC ACID (CITh)
1i: CITRIC ACID (CITi)
1j: CITRIC ACID (CITj)
1k: CITRIC ACID (CITk)
1l: CITRIC ACID (CITl)
1m: CITRIC ACID (CITm)
1n: CITRIC ACID (CITn)
1o: CITRIC ACID (CITo)
1p: CITRIC ACID (CITp)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CIT
16
Ligand/Ion
CITRIC ACID
2
EDO
22
Ligand/Ion
1,2-ETHANEDIOL
[
close Hetero Component info
]
Sites
(38, 38)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:11 , TYR A:51 , PHE A:59 , ARG A:87 , ARG A:104 , ASN A:114 , HIS A:117 , HOH A:308 , HOH A:314 , HOH A:335
binding site for residue CIT A 201
02
AC2
SOFTWARE
HOH A:329
binding site for residue EDO A 202
03
AC3
SOFTWARE
GLY A:31 , LYS A:33 , HOH A:313 , ASN B:18 , GLU C:28 , LYS D:17 , ASN D:18
binding site for residue EDO A 203
04
AC4
SOFTWARE
LYS B:11 , TYR B:51 , THR B:93 , ARG B:104 , ASN B:114 , HIS B:117 , HOH B:303 , HOH B:312 , HOH B:314 , HOH B:329 , HOH B:331 , HOH B:348
binding site for residue CIT B 201
05
AC5
SOFTWARE
LEU B:127 , TYR B:131 , HOH B:311 , HOH B:368
binding site for residue EDO B 202
06
AC6
SOFTWARE
LYS C:11 , TYR C:51 , ARG C:87 , THR C:93 , ARG C:104 , ASN C:114 , HIS C:117 , HOH C:311 , HOH C:322 , HOH C:345 , HOH C:359 , HOH C:371 , HOH C:373 , HOH C:387 , HOH C:403
binding site for residue CIT C 201
07
AC7
SOFTWARE
PHE C:50 , LEU C:127 , GLU C:128 , HOH C:319 , HOH C:323 , HOH C:353
binding site for residue EDO C 202
08
AC8
SOFTWARE
GLU A:28 , LYS B:17 , ASN B:18 , HOH B:370 , GLY C:31 , LYS C:33 , HOH C:356
binding site for residue EDO C 203
09
AC9
SOFTWARE
LYS D:11 , TYR D:51 , ARG D:104 , ASN D:114 , HIS D:117 , HOH D:327 , HOH D:334 , HOH D:338 , HOH D:340 , HOH D:347 , HOH D:356 , HOH D:366 , HOH D:385
binding site for residue CIT D 201
10
AD1
SOFTWARE
LEU D:127 , GLU D:128 , HOH D:311 , HOH D:320 , HOH D:380
binding site for residue EDO D 202
11
AD2
SOFTWARE
LYS E:11 , TYR E:51 , THR E:93 , ARG E:104 , ASN E:114 , HIS E:117 , HOH E:311 , HOH E:319 , HOH E:324 , HOH E:339 , HOH E:340 , HOH E:355 , HOH E:391
binding site for residue CIT E 201
12
AD3
SOFTWARE
PHE E:50 , GLU E:128 , HOH E:344 , HOH E:348
binding site for residue EDO E 202
13
AD4
SOFTWARE
LYS F:11 , TYR F:51 , ARG F:87 , THR F:93 , ARG F:104 , ASN F:114 , HIS F:117 , HOH F:301 , HOH F:325 , HOH F:336 , HOH F:346 , HOH F:351 , HOH F:352 , HOH F:377 , HOH F:392 , HOH F:396
binding site for residue CIT F 201
14
AD5
SOFTWARE
PHE F:50 , HOH F:307 , HOH F:314 , HOH F:371
binding site for residue EDO F 202
15
AD6
SOFTWARE
LYS G:11 , TYR G:51 , ARG G:104 , ASN G:114 , HIS G:117 , HOH G:315 , HOH G:325 , HOH G:333 , HOH G:334 , HOH G:335 , HOH G:340 , HOH G:355 , HOH G:369
binding site for residue CIT G 201
16
AD7
SOFTWARE
GLU G:128 , HOH G:412
binding site for residue EDO G 202
17
AD8
SOFTWARE
ASN E:18 , LYS F:33 , LYS G:17 , ASN G:18 , GLU H:28 , GLU H:29 , HOH H:1922 , HOH H:1949
binding site for residue EDO H 201
18
AD9
SOFTWARE
LYS H:11 , TYR H:51 , ARG H:104 , ASN H:114 , HIS H:117 , HOH H:1926 , HOH H:1930 , HOH H:1931 , HOH H:1934 , HOH H:1940 , HOH H:1947 , HOH H:1977
binding site for residue CIT H 202
19
AE1
SOFTWARE
HOH H:1914 , HOH H:1924 , HOH H:1970
binding site for residue EDO H 203
20
AE2
SOFTWARE
GLU F:28 , ASN G:18 , GLY H:31 , LYS H:33 , HOH H:1903 , HOH H:1918 , HOH H:1938
binding site for residue EDO H 204
21
AE3
SOFTWARE
LYS I:11 , TYR I:51 , THR I:93 , ARG I:104 , ASN I:114 , HIS I:117 , HOH I:321 , HOH I:332 , HOH I:353 , HOH I:356 , HOH I:368 , HOH I:398
binding site for residue CIT I 201
22
AE4
SOFTWARE
PHE I:50 , LEU I:127 , HOH I:307 , HOH I:311 , HOH I:338 , HOH I:344
binding site for residue EDO I 202
23
AE5
SOFTWARE
LYS J:11 , TYR J:51 , THR J:93 , ARG J:104 , ASN J:114 , HIS J:117 , HOH J:318 , HOH J:319 , HOH J:323 , HOH J:325 , HOH J:330 , HOH J:355 , HOH J:365
binding site for residue CIT J 201
24
AE6
SOFTWARE
HOH J:326 , HOH J:347 , HOH J:380 , HOH J:385
binding site for residue EDO J 202
25
AE7
SOFTWARE
LYS K:11 , TYR K:51 , PHE K:59 , ARG K:104 , ASN K:114 , HIS K:117 , HOH K:334 , HOH K:344 , HOH K:349 , HOH K:351 , HOH K:355
binding site for residue CIT K 201
26
AE8
SOFTWARE
LEU K:127 , HOH K:311 , HOH K:314 , HOH K:345
binding site for residue EDO K 202
27
AE9
SOFTWARE
GLU I:28 , LYS J:17 , ASN J:18 , GLY K:31 , LYS K:33 , HOH K:317 , ASN L:18
binding site for residue EDO K 203
28
AF1
SOFTWARE
LYS L:11 , TYR L:51 , PHE L:59 , ARG L:104 , ASN L:114 , HIS L:117 , HOH L:307 , HOH L:335 , HOH L:341 , HOH L:345 , HOH L:386 , HOH L:410 , HOH L:411
binding site for residue CIT L 201
29
AF2
SOFTWARE
PHE L:50 , TYR L:131 , HOH L:346 , HOH L:374 , HOH L:399 , HOH L:406
binding site for residue EDO L 202
30
AF3
SOFTWARE
LYS M:11 , TYR M:51 , PHE M:59 , ARG M:104 , ASN M:114 , HIS M:117 , HOH M:311 , HOH M:319 , HOH M:324 , HOH M:341 , HOH M:342
binding site for residue CIT M 201
31
AF4
SOFTWARE
GLU M:128 , TYR M:131 , HOH M:302 , HOH M:328 , HOH M:360
binding site for residue EDO M 202
32
AF5
SOFTWARE
GLY M:31 , LYS M:33 , HOH M:329 , ASN N:18 , GLU O:28 , LYS P:17 , ASN P:18
binding site for residue EDO M 203
33
AF6
SOFTWARE
LYS N:11 , TYR N:51 , THR N:93 , ARG N:104 , ASN N:114 , HIS N:117 , HOH N:316 , HOH N:317 , HOH N:327 , HOH N:343 , HOH N:366 , HOH N:379 , HOH N:395
binding site for residue CIT N 201
34
AF7
SOFTWARE
LEU N:127 , GLU N:128 , HOH N:344 , HOH N:349
binding site for residue EDO N 202
35
AF8
SOFTWARE
LYS O:11 , TYR O:51 , ARG O:104 , ASN O:114 , HIS O:117 , HOH O:306 , HOH O:312 , HOH O:333
binding site for residue CIT O 201
36
AF9
SOFTWARE
PHE O:50 , ASN O:124 , GLU O:128 , HOH O:301 , HOH O:331
binding site for residue EDO O 202
37
AG1
SOFTWARE
LYS P:11 , TYR P:51 , THR P:93 , ARG P:104 , ASN P:114 , HIS P:117 , HOH P:306 , HOH P:324 , HOH P:326 , HOH P:330 , HOH P:336 , HOH P:339 , HOH P:340
binding site for residue CIT P 201
38
AG2
SOFTWARE
LEU P:127 , HOH P:342 , HOH P:355
binding site for residue EDO P 202
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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