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5UQY
Asym. Unit
Info
Asym.Unit (452 KB)
Biol.Unit 1 (341 KB)
Biol.Unit 2 (325 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MARBURG VIRUS GP IN COMPLEX WITH THE HUMAN SURVIVOR ANTIBODY MR78
Authors
:
T. Hashiguchi, M. L. Fusco, K. M. Hastie, Z. A. Bomholdt, J. E. Lee, A. I. F R. Matsuoka, D. Kohda, Y. Yanagi, M. Hammel, J. E. Crowe, E. O. Saphire
Date
:
08 Feb 17 (Deposition) - 01 Mar 17 (Release) - 01 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D (3x)
Biol. Unit 2: E,F,G,H,I,J,K,L,M,N,O,P (1x)
Keywords
:
Glycoprotein, Viral Protein, Antibody, Fab, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hashiguchi, M. L. Fusco, Z. A. Bornholdt, J. E. Lee, A. I. Flyak, R. Matsuoka, D. Kohda, Y. Yanagi, M. Hammel, J. E. Crowe, E. O. Saphire
Structural Basis For Marburg Virus Neutralization By A Cross-Reactive Human Antibody.
Cell V. 160 904 2015
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Hetero Components
(3, 40)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
5
Ligand/Ion
BETA-D-MANNOSE
2
MAN
12
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAG I:302 , BMA I:303
binding site for residue MAN I 305
02
AC2
SOFTWARE
BMA N:703
binding site for residue MAN M 305
03
AC3
SOFTWARE
ASN A:94 , HIS A:124
binding site for Poly-Saccharide residues NAG A 301 through NAG A 302 bound to ASN A 94
04
AC4
SOFTWARE
ASN A:171 , THR A:173 , ASN B:475 , THR B:476
binding site for Poly-Saccharide residues NAG A 303 through NAG A 304 bound to ASN A 171
05
AC5
SOFTWARE
GLN A:57 , TRP A:140 , ASN A:164 , ASN B:564
binding site for Poly-Saccharide residues NAG B 701 through MAN B 706 bound to ASN B 564
06
AC6
SOFTWARE
ASN E:94 , HIS E:124
binding site for Poly-Saccharide residues NAG E 301 through NAG E 302 bound to ASN E 94
07
AC7
SOFTWARE
ASN E:171 , THR E:173
binding site for Mono-Saccharide NAG E 303 bound to ASN E 171
08
AC8
SOFTWARE
GLU C:187 , GLN E:57 , TRP E:140 , ASN E:164 , ASN F:564 , TRP J:532 , PHE J:536
binding site for Poly-Saccharide residues NAG F 701 through MAN F 706 bound to ASN F 564
09
AC9
SOFTWARE
ASN I:94 , HIS I:124 , MAN I:305
binding site for Poly-Saccharide residues NAG I 301 through MAN I 304 bound to ASN I 94
10
AD1
SOFTWARE
GLN I:42 , ASN I:171 , ASN J:475 , THR J:476
binding site for Poly-Saccharide residues NAG I 306 through NAG I 307 bound to ASN I 171
11
AD2
SOFTWARE
GLN I:57 , TRP I:140 , ASN I:164 , ASN J:564 , TRP N:532
binding site for Poly-Saccharide residues NAG J 701 through MAN J 704 bound to ASN J 564
12
AD3
SOFTWARE
ASN M:94 , HIS M:124
binding site for Poly-Saccharide residues NAG M 301 through NAG M 302 bound to ASN M 94
13
AD4
SOFTWARE
GLN M:42 , ASN M:171 , THR M:173 , ASN N:475 , THR N:476
binding site for Poly-Saccharide residues NAG M 303 through NAG M 304 bound to ASN M 171
14
AD5
SOFTWARE
TRP F:532 , PHE F:536 , GLN M:57 , TRP M:140 , MAN M:305 , ASN N:564
binding site for Poly-Saccharide residues NAG N 701 through MAN N 705 bound to ASN N 564
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Show PDB file:
Asym.Unit (452 KB)
Header - Asym.Unit
Biol.Unit 1 (341 KB)
Header - Biol.Unit 1
Biol.Unit 2 (325 KB)
Header - Biol.Unit 2
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