PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5UO9
Asym. Unit
Info
Asym.Unit (591 KB)
Biol.Unit 1 (295 KB)
Biol.Unit 2 (290 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF HUMAN ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN IN COMPLEX WITH 7-[(3-ETHYL-5-((METHYLAMINO)METHYL)PHENOXY) METHYL]QUINOLIN-2-AMINE
Authors
:
G. Chreifi, H. Li, T. L. Poulos
Date
:
31 Jan 17 (Deposition) - 03 May 17 (Release) - 24 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Nitric Oxide Synthase, Inhibitor Complex, Heme Enzyme, Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Cinelli, H. Li, G. Chreifi, T. L. Poulos, R. B. Silverman
Nitrile In The Hole: Discovery Of A Small Auxiliary Pocket In Neuronal Nitric Oxide Synthase Leading To The Developmen Of Potent And Selective 2-Aminoquinoline Inhibitors.
J. Med. Chem. V. 60 3958 2017
[
close entry info
]
Hetero Components
(10, 39)
Info
All Hetero Components
01a: 7-({3-ETHYL-5-[(METHYLAMINO)METHYL... (8J4a)
01b: 7-({3-ETHYL-5-[(METHYLAMINO)METHYL... (8J4b)
01c: 7-({3-ETHYL-5-[(METHYLAMINO)METHYL... (8J4c)
01d: 7-({3-ETHYL-5-[(METHYLAMINO)METHYL... (8J4d)
02a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
02b: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBb)
02c: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBc)
02d: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBd)
02e: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBe)
02f: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBf)
02g: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBg)
02h: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBh)
02i: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBi)
02j: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBj)
02k: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBk)
02l: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBl)
03a: CALCIUM ION (CAa)
04a: CHLORIDE ION (CLa)
04b: CHLORIDE ION (CLb)
04c: CHLORIDE ION (CLc)
04d: CHLORIDE ION (CLd)
04e: CHLORIDE ION (CLe)
05a: GADOLINIUM ATOM (GDa)
05b: GADOLINIUM ATOM (GDb)
05c: GADOLINIUM ATOM (GDc)
05d: GADOLINIUM ATOM (GDd)
06a: GLYCEROL (GOLa)
06b: GLYCEROL (GOLb)
07a: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Ba)
07b: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bb)
07c: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bc)
07d: 5,6,7,8-TETRAHYDROBIOPTERIN (H4Bd)
08a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
08b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
08c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
08d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
09a: MAGNESIUM ION (MGa)
10a: ZINC ION (ZNa)
10b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
8J4
4
Ligand/Ion
7-({3-ETHYL-5-[(METHYLAMINO)METHYL]PHENOXY}METHYL)QUINOLIN-2-AMINE
2
BTB
12
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3
CA
1
Ligand/Ion
CALCIUM ION
4
CL
5
Ligand/Ion
CHLORIDE ION
5
GD
4
Ligand/Ion
GADOLINIUM ATOM
6
GOL
2
Ligand/Ion
GLYCEROL
7
H4B
4
Ligand/Ion
5,6,7,8-TETRAHYDROBIOPTERIN
8
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
9
MG
1
Ligand/Ion
MAGNESIUM ION
10
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:178 , ARG A:183 , CYS A:184 , PHE A:353 , SER A:354 , TRP A:356 , MET A:358 , GLU A:361 , TRP A:447 , PHE A:473 , TYR A:475 , H4B A:502 , 8J4 A:503
binding site for residue HEM A 501
02
AC2
SOFTWARE
SER A:102 , ARG A:365 , ALA A:446 , TRP A:447 , HEM A:501 , HOH A:658 , TRP B:445 , PHE B:460 , GLN B:462 , GLU B:463
binding site for residue H4B A 502
03
AC3
SOFTWARE
PHE A:105 , VAL A:336 , TRP A:356 , GLU A:361 , HEM A:501
binding site for residue 8J4 A 503
04
AC4
SOFTWARE
TRP A:322 , CYS A:382 , ASP A:384 , GD A:509 , HOH A:648 , ALA D:325 , LEU D:326 , ASP D:378 , CYS D:382 , HOH D:625
binding site for residue BTB A 504
05
AC5
SOFTWARE
GLU A:377 , THR A:387 , ARG A:388 , HOH A:605 , ASP D:384
binding site for residue BTB A 505
06
AC6
SOFTWARE
CYS A:94 , CYS A:99 , CYS B:94 , CYS B:99
binding site for residue ZN A 506
07
AC7
SOFTWARE
GLU A:167
binding site for residue GOL A 507
08
AC8
SOFTWARE
TYR A:357 , ASN A:366
binding site for residue CL A 508
09
AC9
SOFTWARE
BTB A:504
binding site for residue GD A 509
10
AD1
SOFTWARE
HOH A:656 , HOH A:672 , HOH A:674 , GLN C:257 , HOH C:612 , HOH C:656
binding site for residue CA A 510
11
AD2
SOFTWARE
TRP B:178 , ALA B:181 , ARG B:183 , CYS B:184 , VAL B:185 , SER B:226 , PHE B:353 , SER B:354 , GLY B:355 , TRP B:356 , GLU B:361 , TYR B:475 , H4B B:502 , 8J4 B:503 , HOH B:641
binding site for residue HEM B 501
12
AD3
SOFTWARE
TRP A:445 , PHE A:460 , GLN A:462 , SER B:102 , ARG B:365 , ALA B:446 , TRP B:447 , HEM B:501 , HOH B:642 , HOH B:655
binding site for residue H4B B 502
13
AD4
SOFTWARE
PRO B:334 , VAL B:336 , TRP B:356 , GLU B:361 , ARG B:365 , HEM B:501
binding site for residue 8J4 B 503
14
AD5
SOFTWARE
THR B:319 , GLU B:321 , GD B:509 , HOH B:646 , SER C:260 , VAL C:261 , ASN C:374 , ASP C:378 , HOH C:602
binding site for residue BTB B 504
15
AD6
SOFTWARE
GLU B:377 , HOH B:602
binding site for residue BTB B 505
16
AD7
SOFTWARE
GLU B:298 , GLU D:167
binding site for residue BTB B 506
17
AD8
SOFTWARE
GLU B:377 , ASP B:378 , HOH B:602
binding site for residue BTB B 507
18
AD9
SOFTWARE
GLN B:247 , ARG B:250 , TYR B:357 , ASN B:366
binding site for residue CL B 508
19
AE1
SOFTWARE
THR B:319 , GLU B:321 , BTB B:504 , HOH B:646 , HOH C:602
binding site for residue GD B 509
20
AE2
SOFTWARE
TRP B:322 , ALA B:325 , LEU B:326 , ASP B:378 , CYS B:382 , VAL C:381 , CYS C:382 , ASP C:384 , GD C:508
binding site for residue BTB B 510
21
AE3
SOFTWARE
ASP B:384 , GLU C:377 , THR C:387
binding site for residue BTB B 511
22
AE4
SOFTWARE
TRP C:178 , ALA C:181 , CYS C:184 , SER C:226 , MET C:339 , PHE C:353 , SER C:354 , GLY C:355 , TRP C:356 , MET C:358 , GLU C:361 , TRP C:447 , PHE C:473 , TYR C:475 , H4B C:502 , 8J4 C:503
binding site for residue HEM C 501
23
AE5
SOFTWARE
SER C:102 , ARG C:365 , ALA C:446 , TRP C:447 , HEM C:501 , HOH C:620 , TRP D:445 , PHE D:460 , GLU D:463
binding site for residue H4B C 502
24
AE6
SOFTWARE
PHE C:105 , VAL C:336 , TRP C:356 , GLU C:361 , HEM C:501 , HOH C:632
binding site for residue 8J4 C 503
25
AE7
SOFTWARE
GLU C:298
binding site for residue BTB C 504
26
AE8
SOFTWARE
CYS C:94 , CYS C:99 , CYS D:94 , CYS D:99 , HOH D:604
binding site for residue ZN C 505
27
AE9
SOFTWARE
GLU C:167
binding site for residue GOL C 506
28
AF1
SOFTWARE
GLN C:247 , TYR C:357 , ASN C:366
binding site for residue CL C 507
29
AF2
SOFTWARE
BTB B:510 , ASP C:384
binding site for residue GD C 508
30
AF3
SOFTWARE
TRP D:178 , ALA D:181 , ARG D:183 , CYS D:184 , SER D:226 , PHE D:353 , SER D:354 , GLY D:355 , TRP D:356 , MET D:358 , GLU D:361 , PHE D:473 , TYR D:475 , H4B D:502 , 8J4 D:503
binding site for residue HEM D 501
31
AF4
SOFTWARE
TRP C:445 , PHE C:460 , HOH C:626 , SER D:102 , ARG D:365 , ALA D:446 , TRP D:447 , HEM D:501 , HOH D:681
binding site for residue H4B D 502
32
AF5
SOFTWARE
VAL D:104 , PHE D:105 , VAL D:336 , TRP D:356 , GLU D:361 , HEM D:501
binding site for residue 8J4 D 503
33
AF6
SOFTWARE
TYR A:373 , ASN A:374 , ASP A:378 , THR D:319 , GLU D:321 , GD D:507 , CL D:510 , HOH D:609
binding site for residue BTB D 504
34
AF7
SOFTWARE
HOH B:708 , ASP D:297 , GLU D:298
binding site for residue BTB D 505
35
AF8
SOFTWARE
GLU D:377 , ASP D:378
binding site for residue BTB D 506
36
AF9
SOFTWARE
THR D:319 , GLU D:321 , BTB D:504 , CL D:510 , HOH D:602
binding site for residue GD D 507
37
AG1
SOFTWARE
GLN D:247 , ARG D:250 , TYR D:357 , ASN D:366 , HOH D:683
binding site for residue CL D 508
38
AG2
SOFTWARE
HOH D:637 , HOH D:662 , HOH D:702 , HOH D:713
binding site for residue MG D 509
39
AG3
SOFTWARE
BTB D:504 , GD D:507
binding site for residue CL D 510
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (591 KB)
Header - Asym.Unit
Biol.Unit 1 (295 KB)
Header - Biol.Unit 1
Biol.Unit 2 (290 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5UO9
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
