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5UM8
Biol. Unit 1
Info
Asym.Unit (543 KB)
Biol.Unit 1 (526 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HIV-1 ENVELOPE TRIMER 16055 NFL TD CC (T569G) IN COMPLEX WITH FABS 35022 AND PGT124
Authors
:
F. Garces, R. L. Stanfield, I. A. Wilson
Date
:
26 Jan 17 (Deposition) - 24 May 17 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.94
Chains
:
Asym. Unit : B,D,E,G,H,L
Biol. Unit 1: B,D,E,G,H,L (1x)
Keywords
:
Hiv-1 Antibody Glycoprotein, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Guenaga, F. Garces, N. De Val, R. L. Stanfield, V. Dubrovskaya, B. Higgins, B. Carrette, A. B. Ward, I. A. Wilson, R. T. Wyatt
Glycine Substitution At Helix-To-Coil Transitions Facilitates The Structural Determination Of A Stabilized Subtype C Hiv Envelope Glycoprotein.
Immunity V. 46 792 2017
[
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Hetero Components
(3, 56)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
5
Ligand/Ion
BETA-D-MANNOSE
2
MAN
16
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
35
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN B:611 , SER B:613 , LEU B:645
binding site for Mono-Saccharide NAG B 702 bound to ASN B 611
02
AC2
SOFTWARE
LYS B:617 , ASN B:625 , MET B:626 , GLU D:1 , TYR D:32 , LYS D:94 , GLY D:95 , LEU D:96 , TYR D:101
binding site for Mono-Saccharide NAG B 703 bound to ASN B 625
03
AC3
SOFTWARE
ARG B:633 , ASN B:637
binding site for Mono-Saccharide NAG B 701 bound to ASN B 637
04
AC4
SOFTWARE
SER B:528 , ASN D:30 , PHE D:31 , HIS D:33 , SER D:52 , SER D:54 , ASP D:56 , ASN D:58 , ARG D:98 , ASP D:99 , GLY D:100 , SER D:100A , THR D:100C , HIS E:95 , ASN E:96 , ASN G:88
binding site for Poly-Saccharide residues NAG G 738 through MAN G 744 bound to ASN G 88
05
AC5
SOFTWARE
ASN G:135 , ASN G:156 , SER G:158 , TYR G:173 , ARG L:94
binding site for Poly-Saccharide residues NAG G 715 through MAN G 719 bound to ASN G 156
06
AC6
SOFTWARE
THR G:128 , GLU G:130 , ASN G:160
binding site for Mono-Saccharide NAG G 707 bound to ASN G 160
07
AC7
SOFTWARE
ARG G:192 , ILE G:194 , ASN G:197 , THR G:198
binding site for Poly-Saccharide residues NAG G 713 through NAG G 714 bound to ASN G 197
08
AC8
SOFTWARE
ASN G:230 , THR G:232 , PHE G:233 , PRO G:238 , CYS G:239 , NAG G:711
binding site for Poly-Saccharide residues NAG G 720 through NAG G 721 bound to ASN G 230
09
AC9
SOFTWARE
VAL D:72E , ASN G:234 , SER G:274 , NAG G:721
binding site for Poly-Saccharide residues NAG G 711 through NAG G 712 bound to ASN G 234
10
AD1
SOFTWARE
GLU G:83 , ASN G:229 , ASN G:241
binding site for Poly-Saccharide residues NAG G 722 through BMA G 724 bound to ASN G 241
11
AD2
SOFTWARE
GLU G:64 , PRO G:212 , LEU G:261 , ASN G:262 , ARG G:379 , LYS G:446 , SER G:447 , NAG G:705
binding site for Poly-Saccharide residues NAG G 745 through MAN G 750 bound to ASN G 262
12
AD3
SOFTWARE
ASN G:276 , THR G:278 , ASN G:279
binding site for Mono-Saccharide NAG G 708 bound to ASN G 276
13
AD4
SOFTWARE
GLY G:268 , ILE G:270 , ASN G:289
binding site for Mono-Saccharide NAG G 700 bound to ASN G 289
14
AD5
SOFTWARE
ASN G:301 , THR G:303 , ILE G:323
binding site for Poly-Saccharide residues NAG G 751 through NAG G 752 bound to ASN G 301
15
AD6
SOFTWARE
TYR G:330 , ASN G:332 , THR G:415 , ARG H:100 , GLY H:100C , VAL H:100E , SER L:30 , ASN L:50 , ASN L:51 , GLN L:52 , PRO L:66 , ASP L:67 , ILE L:67A
binding site for Poly-Saccharide residues NAG G 728 through MAN G 737 bound to ASN G 332
16
AD7
SOFTWARE
ASN G:360 , THR G:394 , THR G:465
binding site for Poly-Saccharide residues NAG G 725 through NAG G 726 bound to ASN G 360
17
AD8
SOFTWARE
ASN G:386 , SER G:388 , NAG G:701
binding site for Poly-Saccharide residues NAG G 709 through NAG G 710 bound to ASN G 386
18
AD9
SOFTWARE
ASN G:392 , NAG G:710
binding site for Poly-Saccharide residues NAG G 701 through NAG G 702 bound to ASN G 392
19
AE1
SOFTWARE
ASN G:398
binding site for Mono-Saccharide NAG G 704 bound to ASN G 398
20
AE2
SOFTWARE
ASN G:442 , THR G:444
binding site for Mono-Saccharide NAG G 703 bound to ASN G 442
21
AE3
SOFTWARE
ASN G:448 , NAG G:745
binding site for Poly-Saccharide residues NAG G 705 through NAG G 706 bound to ASN G 448
22
AE4
SOFTWARE
PRO G:354 , SER G:462 , ASN G:463
binding site for Mono-Saccharide NAG G 727 bound to ASN G 463
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Sorry, no Info available
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Asymmetric Unit 1
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select residue range 5 to 10 in all chains
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Asym.Unit (543 KB)
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Biol.Unit 1 (526 KB)
Header - Biol.Unit 1
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