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5UL4
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
STRUCTURE OF COBALAMIN-DEPENDENT S-ADENOSYLMETHIONINE RADICAL ENZYME OXSB WITH AQUA-COBALAMIN AND S-ADENOSYLMETHIONINE BOUND
Authors
:
J. Bridwell-Rabb, C. L. Drennan
Date
:
24 Jan 17 (Deposition) - 19 Apr 17 (Release) - 03 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Metalloprotein, Cobalamin, Radical Sam, S-Adenosylmethionine, Oxetanocin, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Bridwell-Rabb, A. Zhong, H. G. Sun, C. L. Drennan, H. W. Liu
A B12-Dependent Radical Sam Enzyme Involved In Oxetanocin A Biosynthesis.
Nature V. 544 322 2017
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Hetero Components
(5, 19)
Info
All Hetero Components
1a: COBALAMIN (B12a)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
3a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
4a: S-ADENOSYLMETHIONINE (SAMa)
5a: IRON/SULFUR CLUSTER (SF4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B12
1
Ligand/Ion
COBALAMIN
2
EDO
15
Ligand/Ion
1,2-ETHANEDIOL
3
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
4
SAM
1
Ligand/Ion
S-ADENOSYLMETHIONINE
5
SF4
1
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:313 , SER A:316 , CYS A:318 , CYS A:321 , ARG A:399 , SAM A:803
binding site for residue SF4 A 801
02
AC2
SOFTWARE
PHE A:131 , ARG A:135 , SER A:139 , GLY A:182 , LEU A:183 , SER A:184 , PHE A:187 , GLY A:216 , ASN A:217 , CYS A:237 , LYS A:239 , GLU A:240 , GLY A:241 , GLU A:242 , GLU A:308 , ARG A:311 , CYS A:321 , PRO A:322 , HIS A:325 , LYS A:326 , ALA A:361 , GLU A:363 , SAM A:803 , EDO A:819 , HOH A:912 , HOH A:974 , HOH A:1008 , HOH A:1017 , HOH A:1053 , HOH A:1065 , HOH A:1084 , HOH A:1101 , HOH A:1146 , HOH A:1178 , HOH A:1269 , HOH A:1306
binding site for residue B12 A 802
03
AC3
SOFTWARE
PHE A:320 , GLU A:363 , ALA A:397 , ALA A:398 , ARG A:399 , PHE A:432 , GLY A:434 , GLU A:436 , LYS A:448 , GLY A:472 , PHE A:473 , ILE A:474 , SER A:543 , MET A:544 , GLU A:545 , SF4 A:801 , B12 A:802 , HOH A:906 , HOH A:912 , HOH A:924 , HOH A:952 , HOH A:986 , HOH A:1033 , HOH A:1082 , HOH A:1101 , HOH A:1241 , HOH A:1379
binding site for residue SAM A 803
04
AC4
SOFTWARE
TRP A:88 , HIS A:89 , SER A:107 , CYS A:108 , ASP A:314 , ARG A:317 , GLU A:368 , LEU A:369 , PRO A:370 , EDO A:806 , HOH A:905 , HOH A:1035
binding site for residue MES A 804
05
AC5
SOFTWARE
LEU A:14 , LYS A:18 , PRO A:75
binding site for residue EDO A 805
06
AC6
SOFTWARE
TRP A:92 , MES A:804
binding site for residue EDO A 806
07
AC7
SOFTWARE
THR A:280 , LEU A:327 , ARG A:328 , SER A:329
binding site for residue EDO A 807
08
AC8
SOFTWARE
TYR A:627 , MET A:630 , ARG A:634 , HOH A:963 , HOH A:1048
binding site for residue EDO A 808
09
AC9
SOFTWARE
ARG A:430 , LEU A:469 , ARG A:470 , HOH A:1012
binding site for residue EDO A 809
10
AD1
SOFTWARE
ASN A:468 , LEU A:469 , HOH A:994 , HOH A:1003
binding site for residue EDO A 810
11
AD2
SOFTWARE
GLU A:285 , SER A:334 , GLN A:337 , HOH A:1051
binding site for residue EDO A 811
12
AD3
SOFTWARE
SER A:538 , TYR A:539 , MET A:540 , ARG A:634 , HOH A:930 , HOH A:943 , HOH A:1107 , HOH A:1120
binding site for residue EDO A 812
13
AD4
SOFTWARE
HIS A:351
binding site for residue EDO A 813
14
AD5
SOFTWARE
LEU A:493 , TYR A:534 , MET A:540 , LEU A:541 , HIS A:638 , HOH A:981
binding site for residue EDO A 814
15
AD6
SOFTWARE
GLU A:116 , LYS A:625 , SER A:628 , HOH A:971
binding site for residue EDO A 815
16
AD7
SOFTWARE
ARG A:135 , TYR A:359 , HOH A:907 , HOH A:1089 , HOH A:1100
binding site for residue EDO A 816
17
AD8
SOFTWARE
LYS A:393 , ALA A:424
binding site for residue EDO A 817
18
AD9
SOFTWARE
HIS A:114 , LYS A:253 , GLU A:255 , HOH A:1169
binding site for residue EDO A 818
19
AE1
SOFTWARE
TYR A:539 , B12 A:802
binding site for residue EDO A 819
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SAPs(SNPs)/Variants
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (148 KB)
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