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5UL2
Asym. Unit
Info
Asym.Unit (137 KB)
Biol.Unit 1 (131 KB)
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(1)
Title
:
STRUCTURE OF APO, SEMET-LABELED COBALAMIN-DEPENDENT S-ADENOSYLMETHIONINE RADICAL ENZYME OXSB
Authors
:
J. Bridwell-Rabb, C. L. Drennan
Date
:
24 Jan 17 (Deposition) - 19 Apr 17 (Release) - 03 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Metalloprotein, Cobalamin, Radical Sam, S-Adenosylmethionine, Oxetanocin, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Bridwell-Rabb, A. Zhong, H. G. Sun, C. L. Drennan, H. W. Liu
A B12-Dependent Radical Sam Enzyme Involved In Oxetanocin A Biosynthesis.
Nature V. 544 322 2017
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Hetero Components
(2, 41)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MSE A:475 , LEU A:493 , TYR A:534 , MSE A:540 , LEU A:541 , HIS A:638 , HOH A:909
binding site for residue EDO A 801
02
AC2
SOFTWARE
PHE A:320 , ILE A:474 , GLU A:545
binding site for residue EDO A 802
03
AC3
SOFTWARE
GLU A:631 , ARG A:634
binding site for residue EDO A 803
04
AC4
SOFTWARE
ILE A:467 , ASN A:468 , LEU A:469 , LEU A:499
binding site for residue EDO A 804
05
AC5
SOFTWARE
ILE A:236 , GLY A:263 , SER A:265 , ASP A:324 , HOH A:932
binding site for residue EDO A 805
06
AC6
SOFTWARE
ARG A:470 , THR A:535 , ILE A:536 , HOH A:924
binding site for residue EDO A 806
07
AC7
SOFTWARE
ILE A:505 , MSE A:508 , TYR A:510 , EDO A:813
binding site for residue EDO A 807
08
AC8
SOFTWARE
ALA A:618 , ASN A:619 , GLU A:622
binding site for residue EDO A 808
09
AC9
SOFTWARE
PHE A:222 , ASP A:324
binding site for residue EDO A 809
10
AD1
SOFTWARE
ARG A:80 , SER A:97 , ARG A:554 , GLN A:557 , ARG A:561
binding site for residue EDO A 810
11
AD2
SOFTWARE
TYR A:539
binding site for residue EDO A 811
12
AD3
SOFTWARE
GLU A:205 , ASN A:206 , GLY A:303 , HIS A:357
binding site for residue EDO A 812
13
AD4
SOFTWARE
THR A:509 , TYR A:510 , EDO A:807 , EDO A:817 , HOH A:934
binding site for residue EDO A 813
14
AD5
SOFTWARE
ASN A:137 , LEU A:138 , THR A:140 , GLY A:141 , ASP A:159 , SER A:291 , ILE A:294
binding site for residue EDO A 814
15
AD6
SOFTWARE
GLY A:438 , SER A:439 , ASN A:440 , SER A:452 , GLU A:488
binding site for residue EDO A 815
16
AD7
SOFTWARE
PHE A:131 , PHE A:432 , ARG A:470 , SER A:538 , HOH A:902
binding site for residue EDO A 816
17
AD8
SOFTWARE
GLU A:415 , LYS A:418 , EDO A:813
binding site for residue EDO A 817
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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