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5UGY
Asym. Unit
Info
Asym.Unit (860 KB)
Biol.Unit 1 (847 KB)
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(1)
Title
:
INFLUENZA HEMAGGLUTININ IN COMPLEX WITH A NEUTRALIZING ANTIBODY
Authors
:
J. R. R. Whittle, S. Jenni, S. C. Harrison
Date
:
10 Jan 17 (Deposition) - 25 Jan 17 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,H,I,J,L,M,N
Biol. Unit 1: A,B,C,D,E,F,H,I,J,L,M,N (1x)
Keywords
:
Influenza Hemagglutinin, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Whittle, R. Zhang, S. Khurana, L. R. King, J. Manischewitz, H. Golding, P. R. Dormitzer, B. F. Haynes, E. B. Walter, M. A. Moody, T. B. Kepler, H. X. Liao, S. C. Harrison
Broadly Neutralizing Human Antibody That Recognizes The Receptor-Binding Pocket Of Influenza Virus Hemagglutinin.
Proc. Natl. Acad. Sci. V. 108 14216 2011 U. S. A.
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Hetero Components
(2, 27)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
2l: N-ACETYL-D-GLUCOSAMINE (NAGl)
2m: N-ACETYL-D-GLUCOSAMINE (NAGm)
2n: N-ACETYL-D-GLUCOSAMINE (NAGn)
2o: N-ACETYL-D-GLUCOSAMINE (NAGo)
2p: N-ACETYL-D-GLUCOSAMINE (NAGp)
2q: N-ACETYL-D-GLUCOSAMINE (NAGq)
2r: N-ACETYL-D-GLUCOSAMINE (NAGr)
2s: N-ACETYL-D-GLUCOSAMINE (NAGs)
2t: N-ACETYL-D-GLUCOSAMINE (NAGt)
2u: N-ACETYL-D-GLUCOSAMINE (NAGu)
2v: N-ACETYL-D-GLUCOSAMINE (NAGv)
2w: N-ACETYL-D-GLUCOSAMINE (NAGw)
2x: N-ACETYL-D-GLUCOSAMINE (NAGx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
NAG
24
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:58
binding site for Poly-Saccharide residues NAG A 401 through NAG A 402 bound to ASN A 58
02
AC2
SOFTWARE
ASN A:68 , GLU A:90 , ASN A:91 , CYS A:94 , ARG A:224
binding site for Poly-Saccharide residues BMA A 403 through NAG A 405 bound to ASN A 91
03
AC3
SOFTWARE
ASN A:129
binding site for Mono-Saccharide NAG A 406 bound to ASN A 129
04
AC4
SOFTWARE
ASN A:163
binding site for Mono-Saccharide NAG A 407 bound to ASN A 163
05
AC5
SOFTWARE
ASN A:290 , SER A:292 , LEU A:293
binding site for Poly-Saccharide residues NAG A 408 through NAG A 409 bound to ASN A 290
06
AC6
SOFTWARE
ASN C:58
binding site for Poly-Saccharide residues NAG C 401 through NAG C 402 bound to ASN C 58
07
AC7
SOFTWARE
ASN C:68 , GLU C:70 , GLU C:90 , ASN C:91 , CYS C:94 , ARG C:224
binding site for Poly-Saccharide residues BMA C 403 through NAG C 405 bound to ASN C 91
08
AC8
SOFTWARE
ASN C:129
binding site for Mono-Saccharide NAG C 406 bound to ASN C 129
09
AC9
SOFTWARE
PRO C:162 , ASN C:163
binding site for Mono-Saccharide NAG C 407 bound to ASN C 163
10
AD1
SOFTWARE
ILE C:75 , ASN C:290 , SER C:292 , LEU C:293
binding site for Poly-Saccharide residues NAG C 408 through NAG C 409 bound to ASN C 290
11
AD2
SOFTWARE
ASN E:58
binding site for Poly-Saccharide residues NAG E 401 through NAG E 402 bound to ASN E 58
12
AD3
SOFTWARE
ASN E:68 , GLU E:70 , GLU E:90 , ASN E:91 , CYS E:94 , ARG E:224
binding site for Poly-Saccharide residues BMA E 403 through NAG E 405 bound to ASN E 91
13
AD4
SOFTWARE
ASN E:129
binding site for Mono-Saccharide NAG E 406 bound to ASN E 129
14
AD5
SOFTWARE
PRO E:162 , ASN E:163
binding site for Mono-Saccharide NAG E 407 bound to ASN E 163
15
AD6
SOFTWARE
ASN E:290 , SER E:292 , LEU E:293
binding site for Poly-Saccharide residues NAG E 408 through NAG E 409 bound to ASN E 290
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 3SM5: 3,12)
Info
All SCOP Domains
1a: SCOP_d3sm5l1 ()
1b: SCOP_d3sm5l2 ()
1c: SCOP_d3sm5m1 ()
1d: SCOP_d3sm5m2 ()
1e: SCOP_d3sm5n1 ()
1f: SCOP_d3sm5n2 ()
2a: SCOP_d3sm5a_ ()
2b: SCOP_d3sm5c_ ()
2c: SCOP_d3sm5e_ ()
3a: SCOP_d3sm5b_ ()
3b: SCOP_d3sm5d_ ()
3c: SCOP_d3sm5f_ ()
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
all PFAM domains
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Protein & NOT Site
Protein & NOT PROSITE
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Chain C
Chain D
Chain E
Chain F
Chain H
Chain I
Chain J
Chain L
Chain M
Chain N
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (860 KB)
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