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5U7K
Asym. Unit
Info
Asym.Unit (246 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (64 KB)
Biol.Unit 4 (60 KB)
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(1)
Title
:
PDE2 CATALYTIC DOMAIN COMPLEXED WITH INHIBITORS
Authors
:
J. Pandit, K. Parris
Date
:
12 Dec 16 (Deposition) - 28 Jun 17 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.06
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Pde2, Sbdd, Inhibitor, Phosphodiesterase, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. J. Helal, E. P. Arnold, T. L. Boyden, C. Chang, T. A. Chappie, K. F. Fennell, M. D. Forman, M. Hajos, J. F. Harms, W. E. Hoffmann, J. M. Humphrey, Z. Kang, R. J. Kleiman, B. L. Kormos, C. W. Lee, J. Lu, N. Maklad, L. Mcdowell, S. Mente, R. E. O'Connor, J. Pandit, M. Piotrowski, A. W. Schmidt, C. J. Schmidt, H. Ueno, P. R. Verhoest, E. X. Yang
Application Of Structure-Based Design And Parallel Chemistr To Identify A Potent, Selective, And Brain Penetrant Phosphodiesterase 2A Inhibitor.
J. Med. Chem. 2017
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Hetero Components
(4, 13)
Info
All Hetero Components
1a: 3-[5-(4-ETHYLPHENYL)-1-METHYL-1H-P... (7Y1a)
1b: 3-[5-(4-ETHYLPHENYL)-1-METHYL-1H-P... (7Y1b)
1c: 3-[5-(4-ETHYLPHENYL)-1-METHYL-1H-P... (7Y1c)
1d: 3-[5-(4-ETHYLPHENYL)-1-METHYL-1H-P... (7Y1d)
2a: CHLORIDE ION (CLa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
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Label:
No.
Name
Count
Type
Full Name
1
7Y1
4
Ligand/Ion
3-[5-(4-ETHYLPHENYL)-1-METHYL-1H-PYRAZOL-4-YL]-5-PROPOXY[1,2,4]TRIAZOLO[4,3-A]PYRAZINE
2
CL
1
Ligand/Ion
CHLORIDE ION
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
ZN
4
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:660 , HIS A:696 , ASP A:697 , ASP A:808 , HOH A:1106 , HOH A:1142
binding site for residue ZN A 1001
02
AC2
SOFTWARE
ASP A:697 , HOH A:1101 , HOH A:1106 , HOH A:1144 , HOH A:1178 , HOH A:1182
binding site for residue MG A 1002
03
AC3
SOFTWARE
LEU A:770 , ASP A:808 , ILE A:826 , PHE A:830 , GLN A:859 , PHE A:862 , HOH A:1132 , HOH A:1162 , HOH A:1199
binding site for residue 7Y1 A 1003
04
AC4
SOFTWARE
HIS B:660 , HIS B:696 , ASP B:697 , ASP B:808 , HOH B:1168 , HOH B:1173
binding site for residue ZN B 1001
05
AC5
SOFTWARE
ASP B:697 , HOH B:1113 , HOH B:1126 , HOH B:1168 , HOH B:1185 , HOH B:1191
binding site for residue MG B 1002
06
AC6
SOFTWARE
LEU B:770 , ASP B:808 , LEU B:809 , ILE B:826 , PHE B:830 , GLN B:859 , PHE B:862 , HOH B:1135 , HOH B:1162 , HOH B:1178
binding site for residue 7Y1 B 1003
07
AC7
SOFTWARE
HIS C:660 , HIS C:696 , ASP C:697 , ASP C:808 , HOH C:1132 , HOH C:1178
binding site for residue ZN C 1001
08
AC8
SOFTWARE
ASP C:697 , HOH C:1129 , HOH C:1131 , HOH C:1132 , HOH C:1157 , HOH C:1184
binding site for residue MG C 1002
09
AC9
SOFTWARE
ALA C:717 , SER C:720 , SER C:721 , ARG D:762
binding site for residue CL C 1003
10
AD1
SOFTWARE
LEU C:770 , HIS C:773 , THR C:805 , ASP C:808 , LEU C:809 , ILE C:826 , PHE C:830 , GLN C:859 , PHE C:862 , HOH C:1137 , HOH C:1168 , HOH C:1211
binding site for residue 7Y1 C 1004
11
AD2
SOFTWARE
HIS D:660 , HIS D:696 , ASP D:697 , ASP D:808 , HOH D:1109 , HOH D:1140
binding site for residue ZN D 1001
12
AD3
SOFTWARE
ASP D:697 , HOH D:1108 , HOH D:1109 , HOH D:1118 , HOH D:1121 , HOH D:1194
binding site for residue MG D 1002
13
AD4
SOFTWARE
LEU D:770 , HIS D:773 , THR D:805 , ASP D:808 , PHE D:830 , GLN D:859 , PHE D:862 , HOH D:1113 , HOH D:1163 , HOH D:1178
binding site for residue 7Y1 D 1003
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SAPs(SNPs)/Variants
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Exons
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SCOP Domains
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Pfam Domains
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Asym.Unit (246 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (65 KB)
Header - Biol.Unit 2
Biol.Unit 3 (64 KB)
Header - Biol.Unit 3
Biol.Unit 4 (60 KB)
Header - Biol.Unit 4
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