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5U3Z
Asym. Unit
Info
Asym.Unit (298 KB)
Biol.Unit 1 (149 KB)
Biol.Unit 2 (143 KB)
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(1)
Title
:
HUMAN PPARDELTA LIGAND-BINDING DOMAIN IN COMPLEXED WITH SPECIFIC AGONIST 10
Authors
:
C. -C. Wu, T. J. Baiga, M. Downes, J. J. La Clair, A. R. Atkins, S. B. Richa T. A. Stockley-Noel, M. E. Bowman, R. M. Evans, J. P. Noel
Date
:
03 Dec 16 (Deposition) - 22 Mar 17 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.72
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Ppardelta, Ligand-Binding Domain, Agonist, Protein Binding-Activator Complex
(Keyword Search:
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Reference
:
C. C. Wu, T. J. Baiga, M. Downes, J. J. La Clair, A. R. Atkins, S. B. Richard, W. Fan, T. A. Stockley-Noel, M. E. Bowman, J. P. Noel, R. M. Evans
Structural Basis For Specific Ligation Of The Peroxisome Proliferator-Activated Receptor Delta.
Proc. Natl. Acad. Sci. V. 114 E2563 2017 U. S. A.
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Hetero Components
(4, 15)
Info
All Hetero Components
1a: 6-[2-({CYCLOPROPYL[4-(FURAN-3-YL)B... (7UAa)
1b: 6-[2-({CYCLOPROPYL[4-(FURAN-3-YL)B... (7UAb)
2a: HEPTYL-BETA-D-GLUCOPYRANOSIDE (B7Ga)
2b: HEPTYL-BETA-D-GLUCOPYRANOSIDE (B7Gb)
2c: HEPTYL-BETA-D-GLUCOPYRANOSIDE (B7Gc)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
3b: DI(HYDROXYETHYL)ETHER (PEGb)
3c: DI(HYDROXYETHYL)ETHER (PEGc)
3d: DI(HYDROXYETHYL)ETHER (PEGd)
3e: DI(HYDROXYETHYL)ETHER (PEGe)
4a: S-1,2-PROPANEDIOL (PGOa)
4b: S-1,2-PROPANEDIOL (PGOb)
4c: S-1,2-PROPANEDIOL (PGOc)
4d: S-1,2-PROPANEDIOL (PGOd)
4e: S-1,2-PROPANEDIOL (PGOe)
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Label:
No.
Name
Count
Type
Full Name
1
7UA
2
Ligand/Ion
6-[2-({CYCLOPROPYL[4-(FURAN-3-YL)BENZENE-1-CARBONYL]AMINO}METHYL)PHENOXY]HEXANOIC ACID
2
B7G
3
Ligand/Ion
HEPTYL-BETA-D-GLUCOPYRANOSIDE
3
PEG
5
Ligand/Ion
DI(HYDROXYETHYL)ETHER
4
PGO
5
Ligand/Ion
S-1,2-PROPANEDIOL
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:245 , ARG A:248 , CYS A:249 , THR A:252 , THR A:253 , HIS A:287 , ILE A:290 , LEU A:294 , LEU A:303 , ILE A:328 , LYS A:331 , HIS A:413 , LEU A:433 , TYR A:437 , HOH A:644
binding site for residue 7UA A 501
02
AC2
SOFTWARE
TYR A:284 , ILE A:436 , TYR A:437 , HOH A:675
binding site for residue PGO A 502
03
AC3
SOFTWARE
HOH A:612
binding site for residue PEG A 503
04
AC4
SOFTWARE
THR A:252 , THR A:256 , ILE A:290 , LEU A:294
binding site for residue PGO A 504
05
AC5
SOFTWARE
GLN A:230 , PRO A:236 , TYR A:247 , CYS A:251 , GLU A:255 , ARG A:258 , SER A:428 , HIS A:430 , PEG A:506
binding site for residue B7G A 505
06
AC6
SOFTWARE
THR A:427 , SER A:428 , LEU A:429 , GLN A:434 , B7G A:505
binding site for residue PEG A 506
07
AC7
SOFTWARE
LEU A:201 , PRO A:210 , ASN A:299
binding site for residue PGO A 507
08
AC8
SOFTWARE
THR A:261 , LYS A:283 , GLU A:435 , ILE A:436 , LYS A:438 , HOH A:658 , ASN B:276 , THR B:280 , B7G B:501 , HOH B:658
binding site for residue B7G A 508
09
AC9
SOFTWARE
SER A:271 , SER A:272 , LEU A:273 , PHE A:274 , LEU A:275 , GLN A:278 , THR B:261 , GLU B:262 , LYS B:265 , B7G B:501 , HOH B:616
binding site for residue PGO A 509
10
AD1
SOFTWARE
LEU A:275 , ASN A:276 , VAL A:279 , THR A:280 , B7G A:508 , PGO A:509 , HOH A:638 , LYS B:283 , GLU B:435 , ILE B:436 , LYS B:438 , HOH B:619
binding site for residue B7G B 501
11
AD2
SOFTWARE
VAL B:245 , PHE B:246 , ARG B:248 , CYS B:249 , THR B:252 , THR B:253 , HIS B:287 , ILE B:290 , LEU B:294 , VAL B:305 , ILE B:328 , LYS B:331 , HIS B:413 , MET B:417 , LEU B:433 , TYR B:437 , HOH B:651
binding site for residue 7UA B 502
12
AD3
SOFTWARE
TRP B:220 , GLN B:221
binding site for residue PEG B 503
13
AD4
SOFTWARE
ARG B:407
binding site for residue PEG B 504
14
AD5
SOFTWARE
LYS B:283 , TYR B:284 , HIS B:287 , VAL B:410 , ILE B:436
binding site for residue PGO B 505
15
AD6
SOFTWARE
ARG A:258 , THR A:261 , SER B:271 , SER B:272 , LEU B:273 , PHE B:274 , LEU B:275
binding site for residue PEG B 506
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Asym.Unit (298 KB)
Header - Asym.Unit
Biol.Unit 1 (149 KB)
Header - Biol.Unit 1
Biol.Unit 2 (143 KB)
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