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5VI8
Asym. Unit
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Asym.Unit (557 KB)
Biol.Unit 1 (544 KB)
5VI8 replaced
5TW1
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(1)
Title
:
STRUCTURE OF A MYCOBACTERIUM SMEGMATIS TRANSCRIPTION INITIATION COMPLEX WITH AN UPSTREAM-FORK PROMOTER FRAGMENT
Authors
:
E. A. Hubin, E. A. Campbell, S. A. Darst
Date
:
14 Apr 17 (Deposition) - 26 Apr 17 (Release) - 26 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.76
Chains
:
Asym. Unit : A,B,C,D,E,F,J,O,P,T
Biol. Unit 1: A,B,C,D,E,F,J,O,P,T (1x)
Keywords
:
Dna-Dependent Rna Polymerase, Nucleotidyl Transferase, Transcription Initiation Complex, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. A. Hubin, A. Fay, C. Xu, J. M. Bean, R. M. Saecker, M. S. Glickman, S. A. Darst, E. A. Campbell
Structure And Function Of The Mycobacterial Transcription Initiation Complex With The Essential Regulator Rbpa.
Elife V. 6 2017
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
2a: MAGNESIUM ION (MGa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
SO4
12
Ligand/Ion
SULFATE ION
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG C:595 , ARG C:915 , ARG C:916
binding site for residue SO4 C 1201
02
AC2
SOFTWARE
LYS C:1117 , GLN C:1120 , GLU C:1137 , MET C:1138 , ARG C:1139 , HOH C:1312
binding site for residue SO4 C 1202
03
AC3
SOFTWARE
LYS C:1031 , GLN D:540
binding site for residue SO4 C 1203
04
AC4
SOFTWARE
ARG C:1058 , GLY C:1060 , GLU C:1061 , MET C:1062 , GLU C:1063
binding site for residue EDO C 1204
05
AC5
SOFTWARE
HIS C:832 , HIS C:1033 , LYS C:1051 , PHE C:1054 , GLY C:1055
binding site for residue EDO C 1205
06
AC6
SOFTWARE
CYS D:890 , ARG D:962 , CYS D:967 , CYS D:974 , CYS D:977
binding site for residue ZN D 2001
07
AC7
SOFTWARE
CYS D:60 , CYS D:62 , CYS D:75 , CYS D:78
binding site for residue ZN D 2002
08
AC8
SOFTWARE
ASP D:535 , ASP D:537 , ASP D:539
binding site for residue MG D 2003
09
AC9
SOFTWARE
GLU D:887 , HIS D:888 , ILE D:990 , ARG D:1267
binding site for residue SO4 D 2004
10
AD1
SOFTWARE
THR D:971 , GLY D:972 , ARG D:1160 , ARG D:1164
binding site for residue SO4 D 2005
11
AD2
SOFTWARE
GLY C:1050 , ARG D:421 , ARG D:427
binding site for residue SO4 D 2006
12
AD3
SOFTWARE
ARG D:894 , GLY D:895 , LYS D:960 , ARG D:1129
binding site for residue SO4 D 2007
13
AD4
SOFTWARE
ARG D:578 , LEU D:579 , LYS D:689 , ALA D:806
binding site for residue EDO D 2008
14
AD5
SOFTWARE
GLU D:1229 , THR D:1230
binding site for residue EDO D 2009
15
AD6
SOFTWARE
GLY D:940 , ASP D:942
binding site for residue EDO D 2010
16
AD7
SOFTWARE
TRP F:221 , ARG F:224 , ARG F:228
binding site for residue SO4 F 501
17
AD8
SOFTWARE
ARG D:389 , MET F:253 , ALA F:254 , PHE F:255
binding site for residue SO4 F 502
18
AD9
SOFTWARE
ARG F:190 , HIS F:232
binding site for residue SO4 F 503
19
AE1
SOFTWARE
LYS F:451 , ARG F:457
binding site for residue SO4 F 504
20
AE2
SOFTWARE
ARG D:356 , ARG F:268 , GLN F:291 , ALA F:292 , HOH O:103
binding site for residue SO4 F 505
21
AE3
SOFTWARE
SER F:406 , ARG F:408 , GLU F:409
binding site for residue EDO F 506
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Info
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (557 KB)
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