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5THV
Biol. Unit 2
Info
Asym.Unit (131 KB)
Biol.Unit 1 (65 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF G305A HDAC8 IN COMPLEX WITH M344
Authors
:
N. J. Porter, D. W. Christianson
Date
:
30 Sep 16 (Deposition) - 21 Dec 16 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Zinc Histone Deactylase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. J. Porter, N. H. Christianson, C. Decroos, D. W. Christianson
Structural And Functional Influence Of The Glycine-Rich Loo G302Gggy On The Catalytic Tyrosine Of Histone Deacetylase 8
Biochemistry V. 55 6718 2016
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Na)
1b: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
B3N
1
Ligand/Ion
4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMINO)-7-OXOHEPTYL]BENZAMIDE
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
K
-1
Ligand/Ion
POTASSIUM ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC4 (SOFTWARE)
02: AE1 (SOFTWARE)
03: AE2 (SOFTWARE)
04: AE3 (SOFTWARE)
05: AE4 (SOFTWARE)
06: AE5 (SOFTWARE)
07: AE6 (SOFTWARE)
08: AE7 (SOFTWARE)
09: AE8 (SOFTWARE)
10: AE9 (SOFTWARE)
11: AF1 (SOFTWARE)
12: AF2 (SOFTWARE)
13: AF3 (SOFTWARE)
14: AF4 (SOFTWARE)
15: AF5 (SOFTWARE)
16: AF6 (SOFTWARE)
17: AF7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC4
SOFTWARE
HIS A:142 , HIS A:143 , PHE A:152 , ASP A:178 , HIS A:180 , ASP A:267 , GLY A:304 , TYR A:306 , ZN A:401 , EDO A:416 , HOH A:543 , ILE B:34 , PHE B:152 , PRO B:273 , TYR B:306 , B3N B:404
binding site for residue B3N A 404
02
AE1
SOFTWARE
ASP B:178 , HIS B:180 , ASP B:267 , B3N B:404
binding site for residue ZN B 401
03
AE2
SOFTWARE
ASP B:176 , ASP B:178 , HIS B:180 , SER B:199 , LEU B:200
binding site for residue K B 402
04
AE3
SOFTWARE
PHE B:189 , THR B:192 , VAL B:195 , TYR B:225 , HOH B:534 , HOH B:631
binding site for residue K B 403
05
AE4
SOFTWARE
LYS A:33 , ILE A:34 , PRO A:273 , TYR A:306 , B3N A:404 , HIS B:142 , HIS B:143 , PHE B:152 , ASP B:178 , HIS B:180 , ASP B:267 , GLY B:304 , TYR B:306 , ZN B:401 , HOH B:551 , HOH B:638
binding site for residue B3N B 404
06
AE5
SOFTWARE
ALA B:188 , HOH B:509 , HOH B:559
binding site for residue EDO B 405
07
AE6
SOFTWARE
PRO B:230 , ILE B:231 , GLN B:232 , ASN B:357 , ARG B:361 , ILE B:362 , ILE B:365 , EDO B:407 , HOH B:511
binding site for residue EDO B 406
08
AE7
SOFTWARE
PHE B:203 , ASP B:213 , ARG B:361 , EDO B:406
binding site for residue EDO B 407
09
AE8
SOFTWARE
PHE B:207 , PHE B:208 , PRO B:209 , GLY B:210 , EDO B:415 , HOH B:503 , HOH B:627
binding site for residue EDO B 408
10
AE9
SOFTWARE
PRO B:281 , VAL B:282 , TYR B:317 , LEU B:346 , GLU B:347 , ILE B:348 , HOH B:524 , HOH B:588
binding site for residue EDO B 409
11
AF1
SOFTWARE
CYS A:275 , ARG A:353 , LYS B:202 , SER B:204 , ASP B:233 , HOH B:518
binding site for residue EDO B 410
12
AF2
SOFTWARE
GLU B:65 , ALA B:68
binding site for residue EDO B 411
13
AF3
SOFTWARE
VAL B:214 , SER B:215 , TYR B:368 , ASN B:372
binding site for residue EDO B 412
14
AF4
SOFTWARE
TYR B:111 , TRP B:141 , PHE B:152 , CYS B:153 , TYR B:154 , LEU B:155
binding site for residue EDO B 413
15
AF5
SOFTWARE
VAL B:133 , LEU B:292 , GLN B:295 , LEU B:296
binding site for residue EDO B 414
16
AF6
SOFTWARE
SER B:150 , PHE B:208 , PRO B:209 , EDO B:408 , HOH B:510 , HOH B:578
binding site for residue EDO B 415
17
AF7
SOFTWARE
THR B:326
binding site for residue EDO B 416
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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SCOP Domains
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Chain B
Asymmetric Unit 1
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Asym.Unit (131 KB)
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