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5THT
Biol. Unit 4
Info
Asym.Unit (242 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF G303A HDAC8 IN COMPLEX WITH M344
Authors
:
N. J. Porter, D. W. Christianson
Date
:
30 Sep 16 (Deposition) - 21 Dec 16 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Zinc Histone Deacetylase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. J. Porter, N. H. Christianson, C. Decroos, D. W. Christianson
Structural And Functional Influence Of The Glycine-Rich Loo G302Gggy On The Catalytic Tyrosine Of Histone Deacetylase 8
Biochemistry V. 55 6718 2016
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Na)
1b: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nb)
1c: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nc)
1d: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nd)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
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Label:
No.
Name
Count
Type
Full Name
1
B3N
1
Ligand/Ion
4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMINO)-7-OXOHEPTYL]BENZAMIDE
2
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
3
K
-1
Ligand/Ion
POTASSIUM ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AD7 (SOFTWARE)
02: AD9 (SOFTWARE)
03: AE1 (SOFTWARE)
04: AF7 (SOFTWARE)
05: AF8 (SOFTWARE)
06: AF9 (SOFTWARE)
07: AG1 (SOFTWARE)
08: AG2 (SOFTWARE)
09: AG3 (SOFTWARE)
10: AG4 (SOFTWARE)
11: AG5 (SOFTWARE)
12: AG6 (SOFTWARE)
13: AG7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AD7
SOFTWARE
GLN B:363 , HOH B:501 , TYR D:24
binding site for residue EDO B 406
02
AD9
SOFTWARE
GLN B:363 , GLN B:364 , ASN B:367 , VAL D:61 , ASP D:110
binding site for residue EDO B 408
03
AE1
SOFTWARE
ALA B:62 , TYR D:368
binding site for residue EDO B 409
04
AF7
SOFTWARE
HIS D:142 , HIS D:143 , GLY D:151 , PHE D:152 , ASP D:178 , HIS D:180 , PHE D:208 , ASP D:267 , TYR D:306 , ZN D:402
binding site for residue B3N D 401
05
AF8
SOFTWARE
ASP D:178 , HIS D:180 , ASP D:267 , B3N D:401
binding site for residue ZN D 402
06
AF9
SOFTWARE
ASP D:176 , ASP D:178 , HIS D:180 , SER D:199 , LEU D:200
binding site for residue K D 403
07
AG1
SOFTWARE
PHE D:189 , THR D:192 , VAL D:195 , TYR D:225 , HOH D:502 , HOH D:525
binding site for residue K D 404
08
AG2
SOFTWARE
PRO D:281 , TYR D:317 , LEU D:346 , GLU D:347 , ILE D:348 , HOH D:540
binding site for residue EDO D 405
09
AG3
SOFTWARE
ARG D:313 , TYR D:340 , ASP D:343 , TYR D:344 , VAL D:345 , GLU D:347 , EDO D:408
binding site for residue EDO D 406
10
AG4
SOFTWARE
TYR D:18 , ALA D:38 , VAL D:41 , HIS D:42 , TRP D:137 , SER D:138 , HOH D:524
binding site for residue EDO D 407
11
AG5
SOFTWARE
ASN D:310 , ILE D:348 , THR D:349 , EDO D:406 , HOH D:515
binding site for residue EDO D 408
12
AG6
SOFTWARE
TRP D:141 , PHE D:152 , CYS D:153 , TYR D:154 , LEU D:155
binding site for residue EDO D 409
13
AG7
SOFTWARE
GLU B:23 , TYR B:24 , HIS D:360
binding site for residue EDO D 410
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Chain D
Asymmetric Unit 1
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Asym.Unit (242 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (64 KB)
Header - Biol.Unit 2
Biol.Unit 3 (62 KB)
Header - Biol.Unit 3
Biol.Unit 4 (61 KB)
Header - Biol.Unit 4
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