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5THT
Asym. Unit
Info
Asym.Unit (242 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (62 KB)
Biol.Unit 4 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF G303A HDAC8 IN COMPLEX WITH M344
Authors
:
N. J. Porter, D. W. Christianson
Date
:
30 Sep 16 (Deposition) - 21 Dec 16 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Zinc Histone Deacetylase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. J. Porter, N. H. Christianson, C. Decroos, D. W. Christianson
Structural And Functional Influence Of The Glycine-Rich Loo G302Gggy On The Catalytic Tyrosine Of Histone Deacetylase 8
Biochemistry V. 55 6718 2016
[
close entry info
]
Hetero Components
(4, 43)
Info
All Hetero Components
1a: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Na)
1b: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nb)
1c: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nc)
1d: 4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMI... (B3Nd)
2a: 1,2-ETHANEDIOL (EDOa)
2aa: 1,2-ETHANEDIOL (EDOaa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
2n: 1,2-ETHANEDIOL (EDOn)
2o: 1,2-ETHANEDIOL (EDOo)
2p: 1,2-ETHANEDIOL (EDOp)
2q: 1,2-ETHANEDIOL (EDOq)
2r: 1,2-ETHANEDIOL (EDOr)
2s: 1,2-ETHANEDIOL (EDOs)
2t: 1,2-ETHANEDIOL (EDOt)
2u: 1,2-ETHANEDIOL (EDOu)
2v: 1,2-ETHANEDIOL (EDOv)
2w: 1,2-ETHANEDIOL (EDOw)
2x: 1,2-ETHANEDIOL (EDOx)
2y: 1,2-ETHANEDIOL (EDOy)
2z: 1,2-ETHANEDIOL (EDOz)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
3g: POTASSIUM ION (Kg)
3h: POTASSIUM ION (Kh)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B3N
4
Ligand/Ion
4-(DIMETHYLAMINO)-N-[7-(HYDROXYAMINO)-7-OXOHEPTYL]BENZAMIDE
2
EDO
27
Ligand/Ion
1,2-ETHANEDIOL
3
K
8
Ligand/Ion
POTASSIUM ION
4
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(43, 43)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
40: AG4 (SOFTWARE)
41: AG5 (SOFTWARE)
42: AG6 (SOFTWARE)
43: AG7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:142 , HIS A:143 , GLY A:151 , ASP A:178 , HIS A:180 , PHE A:208 , ASP A:267 , TYR A:306 , ZN A:402 , HOH A:536 , PRO B:273
binding site for residue B3N A 401
02
AC2
SOFTWARE
ASP A:178 , HIS A:180 , ASP A:267 , B3N A:401
binding site for residue ZN A 402
03
AC3
SOFTWARE
ASP A:176 , ASP A:178 , HIS A:180 , SER A:199 , LEU A:200
binding site for residue K A 403
04
AC4
SOFTWARE
PHE A:189 , THR A:192 , VAL A:195 , TYR A:225 , HOH A:505 , HOH A:543
binding site for residue K A 404
05
AC5
SOFTWARE
PRO A:281 , VAL A:282 , TYR A:317 , LEU A:346 , GLU A:347 , ILE A:348 , HOH A:507
binding site for residue EDO A 405
06
AC6
SOFTWARE
GLN A:363 , HOH A:501
binding site for residue EDO A 406
07
AC7
SOFTWARE
TYR A:111 , TRP A:141 , PHE A:152 , CYS A:153 , TYR A:154 , LEU A:155
binding site for residue EDO A 407
08
AC8
SOFTWARE
ASN A:307 , LEU A:308 , ALA A:309 , ALA A:339
binding site for residue EDO A 408
09
AC9
SOFTWARE
SER A:63 , MET A:64 , GLU A:65
binding site for residue EDO A 409
10
AD1
SOFTWARE
VAL A:133 , LEU A:292 , GLN A:295 , LEU A:296
binding site for residue EDO A 410
11
AD2
SOFTWARE
LYS A:33 , PHE A:152 , PRO A:273 , ASP B:101 , HIS B:142 , HIS B:143 , GLY B:151 , PHE B:152 , ASP B:178 , HIS B:180 , PHE B:208 , ASP B:267 , TYR B:306 , ZN B:402 , HOH B:553 , HOH B:556
binding site for residue B3N B 401
12
AD3
SOFTWARE
ASP B:178 , HIS B:180 , ASP B:267 , B3N B:401
binding site for residue ZN B 402
13
AD4
SOFTWARE
ASP B:176 , ASP B:178 , HIS B:180 , SER B:199 , LEU B:200
binding site for residue K B 403
14
AD5
SOFTWARE
PHE B:189 , THR B:192 , VAL B:195 , TYR B:225 , HOH B:506 , HOH B:537
binding site for residue K B 404
15
AD6
SOFTWARE
PRO B:281 , VAL B:282 , TYR B:317 , LEU B:346 , GLU B:347 , HOH B:508
binding site for residue EDO B 405
16
AD7
SOFTWARE
GLN B:363 , HOH B:501 , TYR D:24
binding site for residue EDO B 406
17
AD8
SOFTWARE
TYR B:111 , TRP B:141 , PHE B:152 , CYS B:153 , TYR B:154 , LEU B:155
binding site for residue EDO B 407
18
AD9
SOFTWARE
GLN B:363 , GLN B:364 , ASN B:367 , VAL D:61 , ASP D:110
binding site for residue EDO B 408
19
AE1
SOFTWARE
ALA B:62 , TYR D:368
binding site for residue EDO B 409
20
AE2
SOFTWARE
ASP C:101 , HIS C:142 , HIS C:143 , GLY C:151 , PHE C:152 , ASP C:178 , HIS C:180 , PHE C:208 , ASP C:267 , TYR C:306 , ZN C:402 , HOH C:511
binding site for residue B3N C 401
21
AE3
SOFTWARE
ASP C:178 , HIS C:180 , ASP C:267 , B3N C:401
binding site for residue ZN C 402
22
AE4
SOFTWARE
ASP C:176 , ASP C:178 , HIS C:180 , SER C:199 , LEU C:200
binding site for residue K C 403
23
AE5
SOFTWARE
PHE C:189 , THR C:192 , VAL C:195 , TYR C:225 , HOH C:502 , HOH C:528
binding site for residue K C 404
24
AE6
SOFTWARE
LYS C:132 , LEU C:292 , GLN C:295 , LEU C:296
binding site for residue EDO C 405
25
AE7
SOFTWARE
PRO C:281 , LEU C:346 , GLU C:347 , ILE C:348 , EDO C:410
binding site for residue EDO C 406
26
AE8
SOFTWARE
LEU C:179 , ASP C:267 , THR C:268 , ILE C:269 , ALA C:270 , ASP C:272 , CYS C:275 , SER C:276 , PHE C:277 , ARG C:353
binding site for residue EDO C 407
27
AE9
SOFTWARE
ASN C:307 , LEU C:308 , ALA C:309
binding site for residue EDO C 408
28
AF1
SOFTWARE
TYR C:317 , GLY C:320 , VAL C:321 , LYS C:325 , THR C:326 , LEU C:327 , EDO C:410
binding site for residue EDO C 409
29
AF2
SOFTWARE
LEU C:327 , GLU C:347 , EDO C:406 , EDO C:409
binding site for residue EDO C 410
30
AF3
SOFTWARE
ALA C:112 , TRP C:141 , PHE C:152 , TYR C:154 , LEU C:155
binding site for residue EDO C 411
31
AF4
SOFTWARE
VAL C:214 , ASP C:216 , VAL C:217 , SER C:226 , VAL C:227 , ASN C:228 , ILE C:369 , ASN C:372 , HOH C:516
binding site for residue EDO C 412
32
AF5
SOFTWARE
ASN C:310 , ILE C:348 , THR C:349
binding site for residue EDO C 413
33
AF6
SOFTWARE
HIS C:78 , GLU C:95 , TYR C:96 , GLY C:97
binding site for residue EDO C 414
34
AF7
SOFTWARE
HIS D:142 , HIS D:143 , GLY D:151 , PHE D:152 , ASP D:178 , HIS D:180 , PHE D:208 , ASP D:267 , TYR D:306 , ZN D:402
binding site for residue B3N D 401
35
AF8
SOFTWARE
ASP D:178 , HIS D:180 , ASP D:267 , B3N D:401
binding site for residue ZN D 402
36
AF9
SOFTWARE
ASP D:176 , ASP D:178 , HIS D:180 , SER D:199 , LEU D:200
binding site for residue K D 403
37
AG1
SOFTWARE
PHE D:189 , THR D:192 , VAL D:195 , TYR D:225 , HOH D:502 , HOH D:525
binding site for residue K D 404
38
AG2
SOFTWARE
PRO D:281 , TYR D:317 , LEU D:346 , GLU D:347 , ILE D:348 , HOH D:540
binding site for residue EDO D 405
39
AG3
SOFTWARE
ARG D:313 , TYR D:340 , ASP D:343 , TYR D:344 , VAL D:345 , GLU D:347 , EDO D:408
binding site for residue EDO D 406
40
AG4
SOFTWARE
TYR D:18 , ALA D:38 , VAL D:41 , HIS D:42 , TRP D:137 , SER D:138 , HOH D:524
binding site for residue EDO D 407
41
AG5
SOFTWARE
ASN D:310 , ILE D:348 , THR D:349 , EDO D:406 , HOH D:515
binding site for residue EDO D 408
42
AG6
SOFTWARE
TRP D:141 , PHE D:152 , CYS D:153 , TYR D:154 , LEU D:155
binding site for residue EDO D 409
43
AG7
SOFTWARE
GLU B:23 , TYR B:24 , HIS D:360
binding site for residue EDO D 410
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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