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5TGX
Biol. Unit 1
Info
Asym.Unit (436 KB)
Biol.Unit 1 (426 KB)
Biol.Unit 2 (213 KB)
Biol.Unit 3 (216 KB)
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(1)
Title
:
RESTRICTION/MODIFICATION SYSTEM-TYPE II R-SWAI COMPLEXED WITH PARTIALLY CLEAVED DNA
Authors
:
B. W. Shen, B. L. Stoddard
Date
:
28 Sep 16 (Deposition) - 21 Dec 16 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,H,I,J,K
Biol. Unit 1: A,B,C,D,H,I,J,K (1x)
Biol. Unit 2: A,B,H,I (1x)
Biol. Unit 3: C,D,J,K (1x)
Keywords
:
R-Swai, Uncleaved Dna Complex, R/M System, Rare Cutter, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. W. Shen, D. F. Heiter, K. D. Lunnen, G. G. Wilson, B. L. Stoddard
Dna Recognition By The Swai Restriction Endonuclease Involves Unusual Distortion Of An 8 Base Pair A:T-Rich Target.
Nucleic Acids Res. V. 45 1516 2017
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Hetero Components
(3, 23)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
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Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
CA
-1
Ligand/Ion
CALCIUM ION
3
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
16
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:76 , ASP A:93 , PHE A:94 , HOH A:439 , DA H:25 , HOH H:202
binding site for residue CA A 301
02
AC2
SOFTWARE
GLY A:65 , ALA A:66 , PRO A:67 , TYR D:61 , ASP D:62
binding site for residue EDO A 302
03
AC3
SOFTWARE
GLU A:159 , SER A:160 , DG I:9 , DC I:10
binding site for residue EDO A 303
04
AC4
SOFTWARE
SER A:160 , ARG A:162 , HOH A:427 , DG I:9 , DC I:10
binding site for residue EDO A 304
05
AC5
SOFTWARE
GLU A:69 , LYS D:82
binding site for residue EDO A 305
06
AC6
SOFTWARE
ASP B:76 , ASP B:93 , PHE B:94 , HOH B:407 , HOH B:408 , DA I:25
binding site for residue CA B 301
07
AC7
SOFTWARE
PHE B:141
binding site for residue ACT B 302
08
AC8
SOFTWARE
ASP C:76 , ASP C:93 , PHE C:94 , HOH C:409 , HOH C:413 , DA J:25
binding site for residue CA C 301
09
AC9
SOFTWARE
ASP D:76 , ASP D:93 , PHE D:94 , HOH D:409 , HOH D:421 , DA K:25
binding site for residue CA D 301
10
AD1
SOFTWARE
GLU D:159 , SER D:160 , LYS D:192 , HOH D:414 , DC J:10
binding site for residue EDO D 302
11
AD2
SOFTWARE
LYS A:72 , DA H:11 , DT H:12 , DG I:29 , DC I:30
binding site for residue EDO H 101
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain K
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (436 KB)
Header - Asym.Unit
Biol.Unit 1 (426 KB)
Header - Biol.Unit 1
Biol.Unit 2 (213 KB)
Header - Biol.Unit 2
Biol.Unit 3 (216 KB)
Header - Biol.Unit 3
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