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5TE7
Asym. Unit
Info
Asym.Unit (387 KB)
Biol.Unit 1 (375 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING VRC01-CLASS ANTIBODY N6 IN COMPLEX WITH HIV-1 CLADE C STRAIN DU172.17 GP120 CORE
Authors
:
T. Zhou, P. D. Kwong
Date
:
20 Sep 16 (Deposition) - 16 Nov 16 (Release) - 30 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : G,H,L
Biol. Unit 1: G,H,L (1x)
Keywords
:
Hiv-1, Vrc01-Class Antibody, N6, Cd4-Binding Site, Gp120, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Huang, B. H. Kang, E. Ishida, T. Zhou, T. Griesman, Z. Sheng, F. Wu, N. A. Doria-Rose, B. Zhang, K. Mckee, S. O'Dell, G. Y. Chuang, A. Druz, I. S. Georgiev, C. A. Schramm, A. Zheng, M. G. Joyce, M. Asokan, A. Ransier, S. Darko, S. A. Migueles, R. T. Bailer, M. K. Louder, S. M. Alam, R. Parks, G. Kelsoe, T. Von Holle, B. F. Haynes, D. C. Douek, V. Hirsch, M. S. Seaman, L. Shapiro, J. R. Mascola, P. D. Kwong, M. Connors
Identification Of A Cd4-Binding-Site Antibody To Hiv That Evolved Near-Pan Neutralization Breadth.
Immunity V. 45 1108 2016
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
EPE
2
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY H:157 , ALA H:158 , LEU H:159 , THR H:160 , SER H:161 , HOH H:457 , ASP L:17 , ARG L:18 , THR L:20 , HOH L:433
binding site for residue EPE H 301
02
AC2
SOFTWARE
LEU H:141 , VAL H:169 , SER H:179 , HOH H:431 , HOH H:480 , THR L:178 , HOH L:450
binding site for residue EDO H 302
03
AC3
SOFTWARE
GLU H:46 , TRP H:47 , HOH H:415 , HOH H:438 , GLN L:96
binding site for residue EDO H 303
04
AC4
SOFTWARE
GLN L:37 , HIS L:38 , LYS L:39 , ARG L:42 , ALA L:43
binding site for residue EDO L 302
05
AC5
SOFTWARE
GLN L:37 , LYS L:45 , PRO L:59 , PHE L:62 , HOH L:406
binding site for residue EDO L 303
06
AC6
SOFTWARE
TYR L:186 , GLY L:212 , GLU L:213
binding site for residue EDO L 304
07
AC7
SOFTWARE
LEU G:52 , GLN G:103 , ASP G:107 , ARG G:327 , ILE G:420 , LYS G:421 , GLN G:422 , ILE G:423
binding site for residue EPE G 508
08
AC8
SOFTWARE
ARG G:425 , MET G:426 , GLY G:429 , GLY G:431
binding site for residue EDO G 509
09
AC9
SOFTWARE
ASN G:276 , LEU G:277 , ASN G:279 , LYS G:282 , ILE G:284 , ARG G:456
binding site for residue EDO G 510
10
AD1
SOFTWARE
ASN G:234 , THR G:236 , PHE G:274
binding site for Mono-Saccharide NAG G 501 bound to ASN G 234
11
AD2
SOFTWARE
VAL G:85 , ASN G:229 , LYS G:231 , ASN G:241 , SER G:243
binding site for Mono-Saccharide NAG G 502 bound to ASN G 241
12
AD3
SOFTWARE
ASN G:262 , ARG G:379 , CYS G:445 , LYS G:446 , SER G:447 , NAG G:507
binding site for Mono-Saccharide NAG G 503 bound to ASN G 262
13
AD4
SOFTWARE
GLU G:268 , GLU G:269 , VAL G:270 , ASN G:289 , GLU G:290 , ARG G:344
binding site for Mono-Saccharide NAG G 504 bound to ASN G 289
14
AD5
SOFTWARE
ASN G:295 , ASN G:332 , ASN G:413 , LYS G:446
binding site for Mono-Saccharide NAG G 505 bound to ASN G 295
15
AD6
SOFTWARE
GLY G:222 , ASN G:392 , THR G:394 , TYR G:395 , ILE G:491
binding site for Mono-Saccharide NAG G 506 bound to ASN G 392
16
AD7
SOFTWARE
ASN G:262 , ASN G:448 , NAG G:503
binding site for Mono-Saccharide NAG G 507 bound to ASN G 448
17
AD8
SOFTWARE
SER H:161 , GLY H:162 , THR H:183 , THR L:20 , ILE L:21 , ASN L:22 , ASN L:72 , HOH L:402 , HOH L:409
binding site for Mono-Saccharide NAG L 301 bound to ASN L 72
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (387 KB)
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