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5TE6
Asym. Unit
Info
Asym.Unit (393 KB)
Biol.Unit 1 (383 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BROADLY NEUTRALIZING VRC01-CLASS ANTIBODY N6 IN COMPLEX WITH HIV-1 CLADE AE STRAIN 93TH057 GP120 CORE
Authors
:
T. Zhou, P. D. Kwong
Date
:
20 Sep 16 (Deposition) - 16 Nov 16 (Release) - 30 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : G,H,L
Biol. Unit 1: G,H,L (1x)
Keywords
:
Hiv-1, Vrc01-Class Antibody, N6, Cd4-Binding Site, Gp120, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Huang, B. H. Kang, E. Ishida, T. Zhou, T. Griesman, Z. Sheng, F. Wu, N. A. Doria-Rose, B. Zhang, K. Mckee, S. O'Dell, G. Y. Chuang, A. Druz, I. S. Georgiev, C. A. Schramm, A. Zheng, M. G. Joyce, M. Asokan, A. Ransier, S. Darko, S. A. Migueles, R. T. Bailer, M. K. Louder, S. M. Alam, R. Parks, G. Kelsoe, T. Von Holle, B. F. Haynes, D. C. Douek, V. Hirsch, M. S. Seaman, L. Shapiro, J. R. Mascola, P. D. Kwong, M. Connors
Identification Of A Cd4-Binding-Site Antibody To Hiv That Evolved Near-Pan Neutralization Breadth.
Immunity V. 45 1108 2016
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
2i: N-ACETYL-D-GLUCOSAMINE (NAGi)
2j: N-ACETYL-D-GLUCOSAMINE (NAGj)
2k: N-ACETYL-D-GLUCOSAMINE (NAGk)
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Label:
No.
Name
Count
Type
Full Name
1
EPE
1
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
2
NAG
11
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU G:52 , GLN G:103 , ASP G:107 , TYR G:217 , ARG G:327 , ILE G:420 , LYS G:421 , GLN G:422 , ILE G:423
binding site for residue EPE G 511
02
AC2
SOFTWARE
ASN G:234 , THR G:236 , SER G:274 , NAG G:504
binding site for Mono-Saccharide NAG G 501 bound to ASN G 234
03
AC3
SOFTWARE
GLU G:83 , ASN G:229 , ASN G:241
binding site for Mono-Saccharide NAG G 502 bound to ASN G 241
04
AC4
SOFTWARE
PRO G:212 , ASN G:262 , ARG G:379 , CYS G:445 , VAL G:446 , SER G:447 , NAG G:510 , HOH G:603
binding site for Mono-Saccharide NAG G 503 bound to ASN G 262
05
AC5
SOFTWARE
ASN G:276 , NAG G:501 , HOH G:638 , GLN L:27 , GLY L:28 , VAL L:29 , ASP L:32 , VAL L:90
binding site for Mono-Saccharide NAG G 504 bound to ASN G 276
06
AC6
SOFTWARE
GLU G:268 , GLU G:269 , ILE G:270 , ASN G:289
binding site for Mono-Saccharide NAG G 505 bound to ASN G 289
07
AC7
SOFTWARE
ASN G:295 , TYR G:330 , GLU G:332 , HOH G:616 , HOH G:625
binding site for Mono-Saccharide NAG G 506 bound to ASN G 295
08
AC8
SOFTWARE
PRO G:81 , GLN G:82 , GLU G:83 , ASN G:334 , LYS G:337
binding site for Mono-Saccharide NAG G 507 bound to ASN G 334
09
AC9
SOFTWARE
MET G:373 , ASN G:386
binding site for Mono-Saccharide NAG G 508 bound to ASN G 386
10
AD1
SOFTWARE
ASN G:392
binding site for Mono-Saccharide NAG G 509 bound to ASN G 392
11
AD2
SOFTWARE
LYS G:252 , ASN G:262 , ASN G:448 , NAG G:503
binding site for Mono-Saccharide NAG G 510 bound to ASN G 448
12
AD3
SOFTWARE
THR L:20 , ASN L:72 , LYS L:169
binding site for Mono-Saccharide NAG L 301 bound to ASN L 72
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (393 KB)
Header - Asym.Unit
Biol.Unit 1 (383 KB)
Header - Biol.Unit 1
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